Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP08_F_M11
         (653 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    28   0.069
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    24   1.1  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   4.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   4.5  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 28.3 bits (60), Expect = 0.069
 Identities = 16/73 (21%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
 Frame = +3

Query: 99  KHQNRAAFKNDLHDTS--HKTKFINSLEIRGVCQRCKNILEWKIKYKKYKPLAVPTKCTS 272
           +H  +   K  L +T      + +   EI+GV         W +KY  ++P++    C+ 
Sbjct: 227 RHNTKNGMKTLLSETDIWEVEQILAKKEIKGVPTYLIKWKNWDLKYNTWEPISNLINCSD 286

Query: 273 CLEKTVKHAYHVL 311
            LE+  ++   +L
Sbjct: 287 ILEEFERNRLQLL 299


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = +3

Query: 189 CQRCKNILEWKIKYKKYKPLAVPTKCTSCLEKTVKHAYHVLCSKCASE 332
           C  C N  +++I+   +K +   T+C SC + TV    H  C     E
Sbjct: 606 CWHCFNCTQYQIR--DHKDV---TQCISCRQGTVPDETHSACRDIPEE 648


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -2

Query: 520 ISSIVLIDAGVFFCVPSSWFLRYLRTVLRFLSDKP 416
           ISS    D+G +FC  S+ + R  + V   + + P
Sbjct: 874 ISSAEASDSGAYFCQASNLYGRDQQLVQLLVQEPP 908


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -2

Query: 520 ISSIVLIDAGVFFCVPSSWFLRYLRTVLRFLSDKP 416
           ISS    D+G +FC  S+ + R  + V   + + P
Sbjct: 870 ISSAEASDSGAYFCQASNLYGRDQQLVQLLVQEPP 904


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,207
Number of Sequences: 438
Number of extensions: 2793
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)