Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP08_F_I24
         (530 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    23   2.6  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    23   2.6  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   2.6  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   3.4  

>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -1

Query: 515 IFITMFWPRFSS 480
           IF+ +FWP F+S
Sbjct: 218 IFLWLFWPSFNS 229


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +2

Query: 164 KCELLFCLVHFKHSHRGLCSAVDG 235
           K E+ F        HRGL S +DG
Sbjct: 103 KIEINFITFDIPCEHRGLVSIIDG 126


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 10/34 (29%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
 Frame = +3

Query: 300 VAKIMPEKAI*RP---EYLTFAFLAITCAEWISI 392
           +A+I+P  ++  P   +YL F  + +T + WI++
Sbjct: 298 LAEIIPPTSLAIPLLGKYLLFTMILVTLSIWITV 331


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +3

Query: 291 YSKVAKIMPEKAI*RPEYLTFAFLAITCAEWISIVARETRDDFY 422
           Y+ V+KI     I  P +    FLAI    W + ++R  R ++Y
Sbjct: 417 YNSVSKIDRASRIVFPLF----FLAINVFYWFAYLSRSERINYY 456


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,268
Number of Sequences: 438
Number of extensions: 2888
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14968302
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)