Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP08_F_I08
         (648 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    25   0.83 
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   5.9  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   5.9  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   5.9  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   5.9  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   7.8  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 24.6 bits (51), Expect = 0.83
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +3

Query: 63   VLLYFSSYQKILNMFYSIKRLLMNVRKTYKIFLELNRNS 179
            V L+F   Q+ L+++   K  ++ +    KIFL L+R S
Sbjct: 1002 VWLFFGCRQRNLDLYRQEKEEMVELGVLDKIFLALSRES 1040


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +2

Query: 524 HGRDRDGICHIHFALR 571
           HG  +D +  +HFALR
Sbjct: 152 HGDFKDPLIPVHFALR 167


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +2

Query: 524 HGRDRDGICHIHFALR 571
           HG  +D +  +HFALR
Sbjct: 152 HGDFKDPLIPVHFALR 167


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +2

Query: 524 HGRDRDGICHIHFALR 571
           HG  +D +  +HFALR
Sbjct: 203 HGDFKDPLIPVHFALR 218


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +2

Query: 524 HGRDRDGICHIHFALR 571
           HG  +D +  +HFALR
Sbjct: 152 HGDFKDPLIPVHFALR 167


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 201 RTFAVSHNCSDSTPKIFYTS 142
           RTF  S+N  DS P+  + S
Sbjct: 264 RTFNASYNSLDSLPEGLFAS 283


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,086
Number of Sequences: 438
Number of extensions: 3276
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)