Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP08_F_F13
         (432 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    23   1.9  
AB006152-1|BAA24504.1|  178|Apis mellifera inositol 1,4,5-tripho...    23   1.9  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   7.8  

>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +1

Query: 97  PKLYQEYTTKTPKKLKIIDAYLFYIFLTAVIQFGYCCLVGTF 222
           P L +EY      KLKII+   F   L   + +   CL+  F
Sbjct: 35  PLLKKEYPLVMDTKLKIIEILQF--ILDVRLDYRISCLLSIF 74


>AB006152-1|BAA24504.1|  178|Apis mellifera inositol
           1,4,5-triphosphate recepter protein.
          Length = 178

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +1

Query: 97  PKLYQEYTTKTPKKLKIIDAYLFYIFLTAVIQFGYCCLVGTF 222
           P L +EY      KLKII+   F   L   + +   CL+  F
Sbjct: 3   PLLKKEYPLVMDTKLKIIEILQF--ILDVRLDYRISCLLSIF 42


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -1

Query: 129 SFRCVFLIQFW 97
           +FRCVF++  W
Sbjct: 48  TFRCVFVLDPW 58


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,731
Number of Sequences: 438
Number of extensions: 2590
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11244597
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)