Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP08_F_C09
(654 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X67247-1|CAA47670.1| 208|Homo sapiens ribosomal protein S8 prot... 266 4e-71
BC070875-1|AAH70875.1| 208|Homo sapiens ribosomal protein S8 pr... 266 4e-71
AL592166-7|CAI13003.1| 208|Homo sapiens ribosomal protein S8 pr... 266 4e-71
AB062401-1|BAB93488.1| 208|Homo sapiens ribosomal protein S8 pr... 266 4e-71
AL592166-8|CAI13002.1| 188|Homo sapiens ribosomal protein S8 pr... 219 7e-57
BC005678-1|AAH05678.1| 80|Homo sapiens Similar to ribosomal pr... 109 1e-23
CR457284-1|CAG33565.1| 201|Homo sapiens FLJ11749 protein. 30 6.3
BC010108-1|AAH10108.1| 201|Homo sapiens chromatin modifying pro... 30 6.3
AY329087-1|AAQ91196.1| 201|Homo sapiens VPS20 protein. 30 6.3
AK021811-1|BAB13901.1| 201|Homo sapiens protein ( Homo sapiens ... 30 6.3
BC037399-1|AAH37399.1| 446|Homo sapiens KIAA0415 protein protein. 30 8.3
BC008841-1|AAH08841.2| 391|Homo sapiens KIAA0415 protein protein. 30 8.3
AB007875-1|BAA24845.1| 634|Homo sapiens KIAA0415 protein. 30 8.3
>X67247-1|CAA47670.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 266 bits (653), Expect = 4e-71
Identities = 129/194 (66%), Positives = 148/194 (76%), Gaps = 1/194 (0%)
Frame = +3
Query: 75 GNVRPYARRGSMS*GVPL-QTPGSVLSVSTPFRSRGGNTKYRALRLDTGNFSWGSECSTR 251
G +PY ++ G P T + T R RGGN KYRALRLD GNFSWGSEC TR
Sbjct: 16 GKRKPYHKKRKYELGRPAANTKIGPRRIHT-VRVRGGNKKYRALRLDVGNFSWGSECCTR 74
Query: 252 KTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEE 431
KTRIIDVVYNASNNELVRTKTLVKN IV++D+TP+RQWYESHY LPLGRKKGAKLT EE
Sbjct: 75 KTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKLTPEEE 134
Query: 432 AIINKKRSQKTARKYLARQRLAKVEGALXEQFHTGRLLACVASRPXQCGRADGYILXGKE 611
I+NKKRS+K +KY R++ AK+ L EQF G+LLAC+ASRP QCGRADGY+L GKE
Sbjct: 135 EILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRADGYVLEGKE 194
Query: 612 LEFYLXKIKSKXAK 653
LEFYL KIK++ K
Sbjct: 195 LEFYLRKIKARKGK 208
Score = 34.3 bits (75), Expect = 0.39
Identities = 13/15 (86%), Positives = 14/15 (93%)
Frame = +1
Query: 28 MGISRDHWHKRRATG 72
MGISRD+WHKRR TG
Sbjct: 1 MGISRDNWHKRRKTG 15
>BC070875-1|AAH70875.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 266 bits (653), Expect = 4e-71
Identities = 129/194 (66%), Positives = 148/194 (76%), Gaps = 1/194 (0%)
Frame = +3
Query: 75 GNVRPYARRGSMS*GVPL-QTPGSVLSVSTPFRSRGGNTKYRALRLDTGNFSWGSECSTR 251
G +PY ++ G P T + T R RGGN KYRALRLD GNFSWGSEC TR
Sbjct: 16 GKRKPYHKKRKYELGRPAANTKIGPRRIHT-VRVRGGNKKYRALRLDVGNFSWGSECCTR 74
Query: 252 KTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEE 431
KTRIIDVVYNASNNELVRTKTLVKN IV++D+TP+RQWYESHY LPLGRKKGAKLT EE
Sbjct: 75 KTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKLTPEEE 134
Query: 432 AIINKKRSQKTARKYLARQRLAKVEGALXEQFHTGRLLACVASRPXQCGRADGYILXGKE 611
I+NKKRS+K +KY R++ AK+ L EQF G+LLAC+ASRP QCGRADGY+L GKE
Sbjct: 135 EILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRADGYVLEGKE 194
Query: 612 LEFYLXKIKSKXAK 653
LEFYL KIK++ K
Sbjct: 195 LEFYLRKIKARKGK 208
Score = 34.3 bits (75), Expect = 0.39
Identities = 13/15 (86%), Positives = 14/15 (93%)
Frame = +1
Query: 28 MGISRDHWHKRRATG 72
MGISRD+WHKRR TG
Sbjct: 1 MGISRDNWHKRRKTG 15
>AL592166-7|CAI13003.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 266 bits (653), Expect = 4e-71
Identities = 129/194 (66%), Positives = 148/194 (76%), Gaps = 1/194 (0%)
Frame = +3
Query: 75 GNVRPYARRGSMS*GVPL-QTPGSVLSVSTPFRSRGGNTKYRALRLDTGNFSWGSECSTR 251
G +PY ++ G P T + T R RGGN KYRALRLD GNFSWGSEC TR
Sbjct: 16 GKRKPYHKKRKYELGRPAANTKIGPRRIHT-VRVRGGNKKYRALRLDVGNFSWGSECCTR 74
Query: 252 KTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEE 431
KTRIIDVVYNASNNELVRTKTLVKN IV++D+TP+RQWYESHY LPLGRKKGAKLT EE
Sbjct: 75 KTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKLTPEEE 134
Query: 432 AIINKKRSQKTARKYLARQRLAKVEGALXEQFHTGRLLACVASRPXQCGRADGYILXGKE 611
I+NKKRS+K +KY R++ AK+ L EQF G+LLAC+ASRP QCGRADGY+L GKE
Sbjct: 135 EILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRADGYVLEGKE 194
Query: 612 LEFYLXKIKSKXAK 653
LEFYL KIK++ K
Sbjct: 195 LEFYLRKIKARKGK 208
Score = 34.3 bits (75), Expect = 0.39
Identities = 13/15 (86%), Positives = 14/15 (93%)
Frame = +1
Query: 28 MGISRDHWHKRRATG 72
MGISRD+WHKRR TG
Sbjct: 1 MGISRDNWHKRRKTG 15
>AB062401-1|BAB93488.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 266 bits (653), Expect = 4e-71
Identities = 129/194 (66%), Positives = 148/194 (76%), Gaps = 1/194 (0%)
Frame = +3
Query: 75 GNVRPYARRGSMS*GVPL-QTPGSVLSVSTPFRSRGGNTKYRALRLDTGNFSWGSECSTR 251
G +PY ++ G P T + T R RGGN KYRALRLD GNFSWGSEC TR
Sbjct: 16 GKRKPYHKKRKYELGRPAANTKIGPRRIHT-VRVRGGNKKYRALRLDVGNFSWGSECCTR 74
Query: 252 KTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEE 431
KTRIIDVVYNASNNELVRTKTLVKN IV++D+TP+RQWYESHY LPLGRKKGAKLT EE
Sbjct: 75 KTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKLTPEEE 134
Query: 432 AIINKKRSQKTARKYLARQRLAKVEGALXEQFHTGRLLACVASRPXQCGRADGYILXGKE 611
I+NKKRS+K +KY R++ AK+ L EQF G+LLAC+ASRP QCGRADGY+L GKE
Sbjct: 135 EILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRADGYVLEGKE 194
Query: 612 LEFYLXKIKSKXAK 653
LEFYL KIK++ K
Sbjct: 195 LEFYLRKIKARKGK 208
Score = 34.3 bits (75), Expect = 0.39
Identities = 13/15 (86%), Positives = 14/15 (93%)
Frame = +1
Query: 28 MGISRDHWHKRRATG 72
MGISRD+WHKRR TG
Sbjct: 1 MGISRDNWHKRRKTG 15
>AL592166-8|CAI13002.1| 188|Homo sapiens ribosomal protein S8
protein.
Length = 188
Score = 219 bits (535), Expect = 7e-57
Identities = 107/157 (68%), Positives = 123/157 (78%)
Frame = +3
Query: 183 NTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDATPFRQ 362
NTK R+ T G C TRKTRIIDVVYNASNNELVRTKTLVKN IV++D+TP+RQ
Sbjct: 35 NTKIGPRRIHTVRVRGG--C-TRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQ 91
Query: 363 WYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALXEQFHTGRL 542
WYESHY LPLGRKKGAKLT EE I+NKKRS+K +KY R++ AK+ L EQF G+L
Sbjct: 92 WYESHYALPLGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKL 151
Query: 543 LACVASRPXQCGRADGYILXGKELEFYLXKIKSKXAK 653
LAC+ASRP QCGRADGY+L GKELEFYL KIK++ K
Sbjct: 152 LACIASRPGQCGRADGYVLEGKELEFYLRKIKARKGK 188
Score = 58.0 bits (134), Expect = 3e-08
Identities = 24/31 (77%), Positives = 28/31 (90%)
Frame = +2
Query: 74 GKRAPIRKKRKYELGRPAANTRLGPQRIHSV 166
GKR P KKRKYELGRPAANT++GP+RIH+V
Sbjct: 16 GKRKPYHKKRKYELGRPAANTKIGPRRIHTV 46
Score = 34.3 bits (75), Expect = 0.39
Identities = 13/15 (86%), Positives = 14/15 (93%)
Frame = +1
Query: 28 MGISRDHWHKRRATG 72
MGISRD+WHKRR TG
Sbjct: 1 MGISRDNWHKRRKTG 15
>BC005678-1|AAH05678.1| 80|Homo sapiens Similar to ribosomal
protein S8 protein.
Length = 80
Score = 109 bits (261), Expect = 1e-23
Identities = 50/80 (62%), Positives = 61/80 (76%)
Frame = +3
Query: 414 LTEAEEAIINKKRSQKTARKYLARQRLAKVEGALXEQFHTGRLLACVASRPXQCGRADGY 593
LT EE I+NKKRS+K +KY R++ AK+ L EQF G+LLAC+ASRP QCGRADGY
Sbjct: 1 LTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRADGY 60
Query: 594 ILXGKELEFYLXKIKSKXAK 653
+L GKELEFYL KIK++ K
Sbjct: 61 VLEGKELEFYLRKIKARKGK 80
>CR457284-1|CAG33565.1| 201|Homo sapiens FLJ11749 protein.
Length = 201
Score = 30.3 bits (65), Expect = 6.3
Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Frame = +3
Query: 393 GRKKGAKLTEAEEAIINKKRSQKTARKYLAR--QRLAKVEGALXEQ 524
GRKK +++TE ++AI+ K+ + R+Y R Q+L + E AL Q
Sbjct: 6 GRKKQSRVTEQDKAILQLKQQRDKLRQYQKRIAQQLER-ERALARQ 50
>BC010108-1|AAH10108.1| 201|Homo sapiens chromatin modifying
protein 6 protein.
Length = 201
Score = 30.3 bits (65), Expect = 6.3
Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Frame = +3
Query: 393 GRKKGAKLTEAEEAIINKKRSQKTARKYLAR--QRLAKVEGALXEQ 524
GRKK +++TE ++AI+ K+ + R+Y R Q+L + E AL Q
Sbjct: 6 GRKKQSRVTEQDKAILQLKQQRDKLRQYQKRIAQQLER-ERALARQ 50
>AY329087-1|AAQ91196.1| 201|Homo sapiens VPS20 protein.
Length = 201
Score = 30.3 bits (65), Expect = 6.3
Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Frame = +3
Query: 393 GRKKGAKLTEAEEAIINKKRSQKTARKYLAR--QRLAKVEGALXEQ 524
GRKK +++TE ++AI+ K+ + R+Y R Q+L + E AL Q
Sbjct: 6 GRKKQSRVTEQDKAILQLKQQRDKLRQYQKRIAQQLER-ERALARQ 50
>AK021811-1|BAB13901.1| 201|Homo sapiens protein ( Homo sapiens
cDNA FLJ11749 fis, clone HEMBA1005558, weakly similar to
NUCLEAR PROTEIN SNF7. ).
Length = 201
Score = 30.3 bits (65), Expect = 6.3
Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Frame = +3
Query: 393 GRKKGAKLTEAEEAIINKKRSQKTARKYLAR--QRLAKVEGALXEQ 524
GRKK +++TE ++AI+ K+ + R+Y R Q+L + E AL Q
Sbjct: 6 GRKKQSRVTEQDKAILQLKQQRDKLRQYQKRIAQQLER-ERALARQ 50
>BC037399-1|AAH37399.1| 446|Homo sapiens KIAA0415 protein protein.
Length = 446
Score = 29.9 bits (64), Expect = 8.3
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = -3
Query: 562 RLATQASKRPVWNCSXRAPSTL 497
R A AS+RP+W+ S RAPS L
Sbjct: 329 RSAPAASERPLWDTSLRAPSCL 350
>BC008841-1|AAH08841.2| 391|Homo sapiens KIAA0415 protein protein.
Length = 391
Score = 29.9 bits (64), Expect = 8.3
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = -3
Query: 562 RLATQASKRPVWNCSXRAPSTL 497
R A AS+RP+W+ S RAPS L
Sbjct: 69 RSAPAASERPLWDTSLRAPSCL 90
>AB007875-1|BAA24845.1| 634|Homo sapiens KIAA0415 protein.
Length = 634
Score = 29.9 bits (64), Expect = 8.3
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = -3
Query: 562 RLATQASKRPVWNCSXRAPSTL 497
R A AS+RP+W+ S RAPS L
Sbjct: 506 RSAPAASERPLWDTSLRAPSCL 527
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,401,091
Number of Sequences: 237096
Number of extensions: 1981121
Number of successful extensions: 4614
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 4386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4610
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7310122300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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