Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP08_F_A02
         (651 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    24   1.1  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    24   1.1  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    22   5.9  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 16/36 (44%), Positives = 20/36 (55%)
 Frame = +3

Query: 234 YFVRFLILGSLLVCFIIY*CTIPLCHNFNYSTTFII 341
           YF R L+  S LVC+ I+   +PL     YS  FII
Sbjct: 206 YFNRGLLSASYLVCYGIWVYFVPL-FLIIYSYWFII 240


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 16/36 (44%), Positives = 20/36 (55%)
 Frame = +3

Query: 234 YFVRFLILGSLLVCFIIY*CTIPLCHNFNYSTTFII 341
           YF R L+  S LVC+ I+   +PL     YS  FII
Sbjct: 82  YFNRGLLSASYLVCYGIWVYFVPL-FLIIYSYWFII 116


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -1

Query: 72  TKRLQTATRLNMSAELSKLPNNN 4
           TKRL     ++  AE  K PN N
Sbjct: 360 TKRLVNIGIISWGAECGKYPNGN 382


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,277
Number of Sequences: 438
Number of extensions: 3166
Number of successful extensions: 18
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)