Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP07_F_P02
         (654 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    23   1.9  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   1.9  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   4.5  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   7.9  

>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = +3

Query: 45  RCYGVFPTKQVREVNNDFFKCYINCELY 128
           + YG+    +++  N D+ KC ++ E Y
Sbjct: 94  KLYGLTKNLEIKNYNIDWDKCILSSESY 121


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 550 PRGLI*LDVLTDQVLRHHPR 609
           P G + LD LTD VL + P+
Sbjct: 722 PTGQLLLDYLTDTVLAYKPK 741


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -1

Query: 342 KQFLNAIVWLSKCTLNHN 289
           +QFLN    LS C + HN
Sbjct: 561 EQFLNTAATLSFCEMIHN 578


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -2

Query: 251 RTIYLDAVCLCRIRRH*GTETPAWAAASFEL 159
           + IY+ ++ LC   R  G   P  A + F+L
Sbjct: 184 KCIYVQSINLCMAGRLFGYLCPGMALSQFDL 214


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,350
Number of Sequences: 438
Number of extensions: 4029
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)