Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP07_F_L11
(656 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ069332-1|AAZ32217.1| 296|Apis mellifera RNA polymerase II lar... 25 0.84
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr... 24 1.5
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot... 23 1.9
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 23 2.6
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 23 2.6
AB207270-1|BAE72137.1| 429|Apis mellifera broad-complex protein. 22 4.5
DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride... 22 5.9
DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride... 22 5.9
DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride... 22 5.9
DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride... 22 5.9
AY661557-1|AAT74557.1| 411|Apis mellifera yellow-f-like protein... 22 5.9
AJ547798-1|CAD67999.1| 587|Apis mellifera octopamine receptor p... 21 7.8
>DQ069332-1|AAZ32217.1| 296|Apis mellifera RNA polymerase II large
subunit protein.
Length = 296
Score = 24.6 bits (51), Expect = 0.84
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +3
Query: 471 KRDVEIMKELGLNFYRFSVSWSRILP 548
KRDV I KE +N F SW +P
Sbjct: 11 KRDVFIEKEQMMNILMFLPSWDGKMP 36
>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
protein.
Length = 1370
Score = 23.8 bits (49), Expect = 1.5
Identities = 8/25 (32%), Positives = 15/25 (60%)
Frame = +3
Query: 540 ILPSGFANQINQAGIDYYNNLINEM 614
+ P+ F +++N +D Y N+I M
Sbjct: 632 VRPNTFTDKVNLTRVDMYANMIETM 656
>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
protein.
Length = 1010
Score = 23.4 bits (48), Expect = 1.9
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +3
Query: 348 QVEGAWDEDGKSLSIWDVAAH 410
+VE WD SL + +VA H
Sbjct: 410 EVENIWDYTPSSLELGEVAVH 430
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 23.0 bits (47), Expect = 2.6
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +3
Query: 264 IAVRNVRGKSKVRYFP 311
+ +R VRGK K Y+P
Sbjct: 376 VLMRTVRGKEKTCYYP 391
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 23.0 bits (47), Expect = 2.6
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +3
Query: 264 IAVRNVRGKSKVRYFP 311
+ +R VRGK K Y+P
Sbjct: 376 VLMRTVRGKEKTCYYP 391
>AB207270-1|BAE72137.1| 429|Apis mellifera broad-complex protein.
Length = 429
Score = 22.2 bits (45), Expect = 4.5
Identities = 11/37 (29%), Positives = 17/37 (45%)
Frame = +2
Query: 92 PAPYPSP*VIRREKAKASVLNTPASFDNTETDPRSVS 202
P P ++RR + + + TP D T PR +S
Sbjct: 162 PTPTTVQQLLRRAQIRRNERRTPDPHDETAKKPRVLS 198
>DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride
channel variant 4 protein.
Length = 489
Score = 21.8 bits (44), Expect = 5.9
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +3
Query: 225 AMNLLFVLLCLSTIAVRNVRGKSKVRYFPDYFEFGAS 335
A +L+F +LC+ T+A+ V + VR D FE G S
Sbjct: 28 ASSLIFTILCILTLALTLV---TLVR-AEDIFEDGKS 60
>DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride
channel variant 3 protein.
Length = 475
Score = 21.8 bits (44), Expect = 5.9
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +3
Query: 225 AMNLLFVLLCLSTIAVRNVRGKSKVRYFPDYFEFGAS 335
A +L+F +LC+ T+A+ V + VR D FE G S
Sbjct: 28 ASSLIFTILCILTLALTLV---TLVR-AEDIFEDGKS 60
>DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride
channel variant 1 protein.
Length = 509
Score = 21.8 bits (44), Expect = 5.9
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +3
Query: 225 AMNLLFVLLCLSTIAVRNVRGKSKVRYFPDYFEFGAS 335
A +L+F +LC+ T+A+ V + VR D FE G S
Sbjct: 28 ASSLIFTILCILTLALTLV---TLVR-AEDIFEDGKS 60
>DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride
channel protein.
Length = 458
Score = 21.8 bits (44), Expect = 5.9
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +3
Query: 225 AMNLLFVLLCLSTIAVRNVRGKSKVRYFPDYFEFGAS 335
A +L+F +LC+ T+A+ V + VR D FE G S
Sbjct: 28 ASSLIFTILCILTLALTLV---TLVR-AEDIFEDGKS 60
>AY661557-1|AAT74557.1| 411|Apis mellifera yellow-f-like protein
protein.
Length = 411
Score = 21.8 bits (44), Expect = 5.9
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +3
Query: 594 NNLINEMLANNIKPFLTIYHW 656
NN+ N M N K F+TI W
Sbjct: 50 NNMPNGMQIWNDKVFITIPRW 70
>AJ547798-1|CAD67999.1| 587|Apis mellifera octopamine receptor
protein.
Length = 587
Score = 21.4 bits (43), Expect = 7.8
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = -3
Query: 315 SQGSNAPCSCRGHFVPLSLKDTTTQTTNS 229
S SN+ CS + + +S+ +T+T N+
Sbjct: 325 SPESNSRCSVKREKIKISVSYPSTETLNT 353
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,027
Number of Sequences: 438
Number of extensions: 4548
Number of successful extensions: 18
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -