Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP07_F_L03
         (581 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      24   1.3  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   1.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   1.7  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    22   3.8  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   3.8  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    22   5.1  
AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    22   5.1  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   6.7  

>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 16/80 (20%), Positives = 39/80 (48%)
 Frame = +1

Query: 262 DLKKETISKRQDHKVKYNSESERIKRELALLLSKKTAINSLLGKQISPKKNVAQTENEDN 441
           +L+ +   +  D+   + S+  R  +E  L L+    + S  G++I+P+++     + D+
Sbjct: 111 ELQTDYDRRLHDNSPSFLSDHSR-DQEQNLYLTPSPQMYSSGGEEITPRQSHQSYHHMDS 169

Query: 442 IFKLPELPKKNQESESEYVK 501
           +   PE+ +   + E +  K
Sbjct: 170 VEYKPEIMEYKPDVEEQRYK 189


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +1

Query: 4    LLSVTMGVTGLWRLIEPTGKPVPVETL 84
            +L    G  G+W+  E TG P+P   L
Sbjct: 942  ILQYKEGDAGIWQQQEFTGPPLPYAAL 968


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +1

Query: 4    LLSVTMGVTGLWRLIEPTGKPVPVETL 84
            +L    G  G+W+  E TG P+P   L
Sbjct: 938  ILQYKEGDAGIWQQQEFTGPPLPYAAL 964


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 5/15 (33%), Positives = 8/15 (53%)
 Frame = -1

Query: 518 CNWLFHFTYSDSLSW 474
           C W+ + TY +   W
Sbjct: 486 CYWVIYVTYQEEFKW 500


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 15/67 (22%), Positives = 28/67 (41%)
 Frame = +1

Query: 274 ETISKRQDHKVKYNSESERIKRELALLLSKKTAINSLLGKQISPKKNVAQTENEDNIFKL 453
           + I++  DH    N+  +    +L++   K+T  N  L +      N    E +D   ++
Sbjct: 415 QNIAQNIDHAK--NTIIDYRNNDLSINEEKRTIENEQLNRMYKSYPNYIDKETKDMNLEI 472

Query: 454 PELPKKN 474
              PK N
Sbjct: 473 STRPKSN 479


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +1

Query: 40  RLIEPTGKPVPVETLENKVLAVDISIWLHQ 129
           +L++   +P+P + L+N   + DI    HQ
Sbjct: 38  QLLQKISQPIPNQELQNLGASYDIESNSHQ 67


>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -1

Query: 269 FKSGKPPSNTKIG 231
           F+ G+P +NTK+G
Sbjct: 27  FELGRPAANTKLG 39


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = -1

Query: 137 FTIWCNHIEMSTAKTLFSNV-STGTGFPVGSINRHN 33
           F   CNHI+ ST K    N+ S  T FP  +  +H+
Sbjct: 150 FEALCNHIKYSTNK---GNIRSAITIFPQRTDGKHD 182



 Score = 21.0 bits (42), Expect = 8.9
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -1

Query: 290 LLEIVSFFKSGKPPSN 243
           LL I S F +G PP N
Sbjct: 517 LLVITSTFGNGDPPEN 532


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,349
Number of Sequences: 438
Number of extensions: 3528
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16870914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)