Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP07_F_K06
         (666 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   1.5  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    23   3.5  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   6.0  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   8.0  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   8.0  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -2

Query: 257  VLKESSPPPMVLDCGHLAIRLDAVL 183
            VL+ S+P P+VL+  H + R+  VL
Sbjct: 1107 VLRASTPAPVVLEAVHASRRVLIVL 1131


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = -1

Query: 168 PSRHYRSGLR 139
           P RHYRSGL+
Sbjct: 139 PLRHYRSGLK 148


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -1

Query: 312 IDEDSTGYVLASSGLAEESVERIVSTPDGLGLWASG 205
           ID   +     SS  A +S   ++ TP+ LGL  SG
Sbjct: 347 IDSHMSDRASVSSKNAADSDNMMMITPELLGLMPSG 382


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +2

Query: 467 ESASSLTSVPVCKDS*SSTPSVEVPALGSLPY*WS 571
           +S SS   V   ++S SS+PS+++   G L   WS
Sbjct: 357 QSQSSPKFVARREESNSSSPSLDLGKEGGLEAQWS 391


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = +1

Query: 268 ETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQL 363
           E  A  H+    + D+EPTV         RQL
Sbjct: 236 ERRAQSHLEAHCYFDIEPTVQQHQPVTVNRQL 267


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,778
Number of Sequences: 438
Number of extensions: 4598
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20099475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)