Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP07_F_G19
(666 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ... 33 0.037
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S... 30 0.26
SPBC337.06c |cwf15||complexed with Cdc5 protein Cwf15 |Schizosac... 30 0.34
SPMIT.02 |||mitochondrial DNA binding endonuclease|Schizosacchar... 29 0.60
SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr ... 29 0.60
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 29 0.80
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 28 1.1
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 27 1.8
SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|c... 27 3.2
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac... 27 3.2
SPAC3C7.09 |set8||lysine methyltransferase Set8 |Schizosaccharom... 26 4.2
SPAC664.03 |||RNA polymerase II associated Paf1 complex |Schizos... 26 5.6
SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subuni... 26 5.6
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 25 7.4
SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|c... 25 7.4
SPBC2D10.09 |||3-hydroxyisobutyryl-CoA hydrolase|Schizosaccharom... 25 9.8
SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone... 25 9.8
>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 817
Score = 33.1 bits (72), Expect = 0.037
Identities = 40/146 (27%), Positives = 67/146 (45%), Gaps = 19/146 (13%)
Frame = +2
Query: 161 KMSSHEPQESIRITRRSLKTLQHS--ANDRENLVG-RPTKGLKHQLSQESPGESVEVKRK 331
K+ S + ES+ I S+K+ H A EN T L+HQ + ++E K
Sbjct: 231 KIVSQKGMESLEIMLNSMKSENHQRMAMLEENHARVMETAELQHQAELQDFASNIEQKAN 290
Query: 332 NLLSK------ETQANLDTKI----SEDDLTNPKGASEK--YWQILAEKRQLALQDALD- 472
+L+ + + + KI SE++L + EK + + E LA+Q +
Sbjct: 291 SLIMEYKNELQSAEEHFSHKIKELTSENELKISRLQEEKDSLLKKVQEGASLAMQRVQNK 350
Query: 473 ---ENEKLRKTIEELKEENASLKQML 541
E ++L+ I+ L+EEN SLKQ +
Sbjct: 351 HDLEKKRLQSAIQPLQEENNSLKQQI 376
>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 832
Score = 30.3 bits (65), Expect = 0.26
Identities = 28/142 (19%), Positives = 62/142 (43%), Gaps = 2/142 (1%)
Frame = +2
Query: 161 KMSSHEPQESIRITRRSLKTLQHSANDRENLVGRPTKGLKHQLSQESPGESVEVKRKNLL 340
K HE RR+L +Q S ++ L QE ++ +N L
Sbjct: 289 KSYKHEYANICESLRRALVLIQGSCTEKILRFKEKILDLLEMKQQEENDRISHIEYENDL 348
Query: 341 S-KETQANL-DTKISEDDLTNPKGASEKYWQILAEKRQLALQDALDENEKLRKTIEELKE 514
+ K+ + + + +++ + + K SEK ++ ++ L+D L E + LR + + +
Sbjct: 349 TVKKLKRRISELEMAVKEYESEKSYSEKEYEEKISSLRIELEDKLAEIDMLRNKLLKEEH 408
Query: 515 ENASLKQMLXXANXFVXIIKEE 580
++ S + L + +V I+++
Sbjct: 409 KHHSTSEKLEELSKYVASIQDK 430
>SPBC337.06c |cwf15||complexed with Cdc5 protein Cwf15
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 265
Score = 29.9 bits (64), Expect = 0.34
Identities = 25/118 (21%), Positives = 51/118 (43%), Gaps = 1/118 (0%)
Frame = +2
Query: 191 IRITRRSLKTLQHSANDRE-NLVGRPTKGLKHQLSQESPGESVEVKRKNLLSKETQANLD 367
+R T +H A+ E + + +G + + P VEV + LL + +A+ D
Sbjct: 58 LRAEAAHFATQEHGASSEEVSQNSKLIEGFTSPSTDDKPNNDVEVDYQELLRQTLEADED 117
Query: 368 TKISEDDLTNPKGASEKYWQILAEKRQLALQDALDENEKLRKTIEELKEENASLKQML 541
S+D + + SE I K + Q+++D + ++ +E + +Q+L
Sbjct: 118 ASDSDDSVDSSNKNSEV--SIKRRKTESNSQESVDSSNS--ESSDEESDSEDETQQLL 171
>SPMIT.02 |||mitochondrial DNA binding
endonuclease|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 384
Score = 29.1 bits (62), Expect = 0.60
Identities = 20/44 (45%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Frame = +2
Query: 410 SEKYWQI-LAEKRQLALQDA-LDENEKLRKTIEELKEENASLKQ 535
++KYW L +K L L+DA L+ EK K +EE++ E SLKQ
Sbjct: 196 TKKYWDYYLFKKAFLILEDANLNSFEKNSK-LEEIRIEKKSLKQ 238
>SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 266
Score = 29.1 bits (62), Expect = 0.60
Identities = 23/107 (21%), Positives = 48/107 (44%), Gaps = 3/107 (2%)
Frame = +2
Query: 269 KGLKHQLSQESPGESVEVKRKNLLSKETQANLDTKISE---DDLTNPKGASEKYWQILAE 439
K K++ +++ G S + N L ++ ++D+K E D+ + K L
Sbjct: 39 KKRKNRKKKKNNGPSEQFVGNNDLEEQRSGSIDSKDKEKPLDEKVKELENANKTLSDLVR 98
Query: 440 KRQLALQDALDENEKLRKTIEELKEENASLKQMLXXANXFVXIIKEE 580
+ Q+ +A + E + K+E+ +K+ L ++ V +KEE
Sbjct: 99 RIQIQRDEAEQKAEIYNRDALNTKQEHLDIKKRLEKSDETVCKLKEE 145
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 28.7 bits (61), Expect = 0.80
Identities = 21/71 (29%), Positives = 37/71 (52%)
Frame = +2
Query: 323 KRKNLLSKETQANLDTKISEDDLTNPKGASEKYWQILAEKRQLALQDALDENEKLRKTIE 502
K +L + + + K E+DL N + + L E R+L L++ +++KLR +E
Sbjct: 489 KLTSLQEQNNEFDRQLKEQEEDLQNKE-------EELTELRKL-LREQTQDSQKLRLLVE 540
Query: 503 ELKEENASLKQ 535
+L+ E LKQ
Sbjct: 541 QLELERQDLKQ 551
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 28.3 bits (60), Expect = 1.1
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Frame = +2
Query: 308 ESVEVKRKNLLSKETQANLDTKISEDDLTN-PKGASEKYWQILA-EKRQLALQDALDENE 481
+++ K K L D + S L+N K +EK I ++ + L D L +
Sbjct: 961 QTISSKYKELEKDYLNIMADYQHSSQHLSNLEKAINEKNLNIRELNEKLMRLDDELLLKQ 1020
Query: 482 KLRKT-IEELKEENASLK 532
+ T ++EL+EENASLK
Sbjct: 1021 RSYDTKVQELREENASLK 1038
Score = 25.8 bits (54), Expect = 5.6
Identities = 29/123 (23%), Positives = 56/123 (45%), Gaps = 1/123 (0%)
Frame = +2
Query: 176 EPQESIRITRRSLKTLQHSANDRENLVGRPTKGLKHQL-SQESPGESVEVKRKNLLSKET 352
E +E+ + R+ TL + E + ++ L + S P + +E++++ L K
Sbjct: 1836 EVREANQTLRKDQDTLLRENRNLERKLHEVSEQLNKKFDSSARPFDEIEMEKEVLTLK-- 1893
Query: 353 QANLDTKISEDDLTNPKGASEKYWQILAEKRQLALQDALDENEKLRKTIEELKEENASLK 532
+NL K DDL + K ++ A K Q + +EN +L + + L++E L+
Sbjct: 1894 -SNLAQK---DDLLSSLVERIKQIEMFALKTQKDSNNHREENLQLHRQLGVLQKEKKDLE 1949
Query: 533 QML 541
L
Sbjct: 1950 LKL 1952
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 27.5 bits (58), Expect = 1.8
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = -2
Query: 296 LAKVDVSVLSLVYPPNFPYHLLNVVMSSV 210
L KVD +L L PPN YH L V+ V
Sbjct: 268 LNKVDRLILELRLPPNDAYHKLRHVIDEV 296
>SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 436
Score = 26.6 bits (56), Expect = 3.2
Identities = 18/113 (15%), Positives = 52/113 (46%)
Frame = +2
Query: 161 KMSSHEPQESIRITRRSLKTLQHSANDRENLVGRPTKGLKHQLSQESPGESVEVKRKNLL 340
K +S +E ++ + L+T+Q + + + + Q Q++ + + ++
Sbjct: 163 KKTSTVQEEELQNAGKKLETVQENPQAYSKVTQQ-----EPQAGQKAVPQEPQANQQETS 217
Query: 341 SKETQANLDTKISEDDLTNPKGASEKYWQILAEKRQLALQDALDENEKLRKTI 499
S + +++ D + ++DD PK ++++ L + Q + ++ + + R I
Sbjct: 218 SNQEESSFDRQETQDDKQKPKTTQQEHYN-LRNRNQATITNSNSKPQTRRSKI 269
>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
Cut14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1172
Score = 26.6 bits (56), Expect = 3.2
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +2
Query: 446 QLALQDALDENEKLRKTIEELKEENASLKQM 538
QL LQ E EKL +++LK +NA+ ++
Sbjct: 686 QLKLQVVTSEYEKLETQLKDLKTQNANFHRL 716
>SPAC3C7.09 |set8||lysine methyltransferase Set8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 429
Score = 26.2 bits (55), Expect = 4.2
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = +2
Query: 386 DLTNPKGASEKYWQILAEKRQLALQDALDENEKL 487
DL N S W + QL L +DENE++
Sbjct: 194 DLCNHSSKSNAKWSFSEDAMQLYLDKDIDENEEV 227
>SPAC664.03 |||RNA polymerase II associated Paf1 complex
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 457
Score = 25.8 bits (54), Expect = 5.6
Identities = 14/64 (21%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Frame = +2
Query: 212 LKTLQHSANDRENLVGRPTKGLKH-QLSQESPGESVEVKRKNLLSKETQANLDTKISEDD 388
L++++ S N+ + +P + + + ++++ G E + +N+ + E+QAN E+
Sbjct: 383 LRSVEGSLNEELSEEEKPAESREQLESAEQTNGVKPETQAQNMSASESQANSPAPPVEEG 442
Query: 389 LTNP 400
T P
Sbjct: 443 NTQP 446
>SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subunit
Orc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 707
Score = 25.8 bits (54), Expect = 5.6
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +2
Query: 203 RRSLKTLQHSANDRENLVGRPTKGLKHQLSQESPGESVEVKRKNL 337
RR+L + ++ EN G+ T GL HQ E ++ +NL
Sbjct: 557 RRALDICRRASELAENKNGKVTPGLIHQAISEMTASPLQKVLRNL 601
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 25.4 bits (53), Expect = 7.4
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = +2
Query: 371 KISEDDLTNPKGASEKYWQILAEKRQLALQDALDENEKLRKTIEELKEENASLKQ 535
K+ DL N K +I++ +RQL EN+KL++T+E A L++
Sbjct: 1158 KLGLSDLQNHVKRISKEMEIISCQRQLLFL----ENKKLKRTVESSNRVIADLQR 1208
>SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1077
Score = 25.4 bits (53), Expect = 7.4
Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Frame = +2
Query: 167 SSHEPQESIRITRRSLKTLQHSANDRENLVGRPTKGLKHQLSQESPGESVEVKRKNLLSK 346
++H+ + R+ R+ T D LVG P L H + G+S+ ++ L
Sbjct: 963 AAHKFNSNFRLLTRASDTANLDIFDAFQLVGEPNVILSH-IKMAEKGKSIILRVYESLGG 1021
Query: 347 ETQANLDTK-ISEDDLTNPKGASE 415
+++A L K ++ +T G E
Sbjct: 1022 KSRARLVIKSLTVASVTKCNGLEE 1045
>SPBC2D10.09 |||3-hydroxyisobutyryl-CoA
hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 429
Score = 25.0 bits (52), Expect = 9.8
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -3
Query: 364 EIGLSFFTQ*IFSFYLYRLPG 302
E G+ +FT SF+ RLPG
Sbjct: 189 ETGIGYFTDVAASFFFSRLPG 209
>SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 809
Score = 25.0 bits (52), Expect = 9.8
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +2
Query: 452 ALQDALDENEKLRKTIEELKEENASLKQML 541
+L+ ENE+LR+ ++ EEN S+++ L
Sbjct: 651 SLESLKRENEELREQLKVEHEENISMQKQL 680
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,284,940
Number of Sequences: 5004
Number of extensions: 43688
Number of successful extensions: 174
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -