Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP07_F_G19
         (666 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   4.6  
DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein ...    22   4.6  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   4.6  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   6.0  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   8.0  

>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +3

Query: 456 YKML*MKMRNYEKLLKN*RRKMH 524
           Y  L   +RN+EK+L+   +KM+
Sbjct: 240 YSRLLSSIRNHEKMLREQAKKMN 262


>DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein 5
          protein.
          Length = 104

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -3

Query: 91 KSILFTTLYEFVN*ETIPDTTKYLK*LPTI 2
          K +LF T+   +N +   D +K+LK  P +
Sbjct: 4  KILLFFTILALINVKAQDDISKFLKDRPYV 33


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +3

Query: 456 YKML*MKMRNYEKLLKN*RRKMH 524
           Y  L   +RN+EK+L+   +KM+
Sbjct: 240 YSRLLSSIRNHEKMLREQAKKMN 262


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -2

Query: 59  RKLRNNPGYNKISKI 15
           R+ R  P YN +SKI
Sbjct: 409 RRRRRTPRYNSVSKI 423


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 6/19 (31%), Positives = 12/19 (63%)
 Frame = -2

Query: 242 YHLLNVVMSSVIVLLFLWI 186
           YHL +  + S ++++  WI
Sbjct: 215 YHLFHTYIPSALIVVMSWI 233


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,913
Number of Sequences: 438
Number of extensions: 3132
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20099475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)