Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP07_F_G05
         (562 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    24   1.2  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    24   1.2  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    24   1.2  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    24   1.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   6.4  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   8.5  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -1

Query: 316 LSISTLSGLVLFFLMTLLAFPQPPIITSYIG 224
           LSIS L  L +FFL+ +   P   ++   +G
Sbjct: 278 LSISILISLHVFFLLVVEIIPPTSLVVPLLG 308


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -1

Query: 316 LSISTLSGLVLFFLMTLLAFPQPPIITSYIG 224
           LSIS L  L +FFL+ +   P   ++   +G
Sbjct: 278 LSISILISLHVFFLLVVEIIPPTSLVVPLLG 308


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -1

Query: 316 LSISTLSGLVLFFLMTLLAFPQPPIITSYIG 224
           LSIS L  L +FFL+     P   ++   +G
Sbjct: 274 LSISILLSLTVFFLLLAEIIPPTSLVVPLLG 304


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
 Frame = -1

Query: 316 LSISTLSGLVLFFLMTLLAFPQPPIITSYIGSDSCGPVVSATWA---SFAALTLN*TDPL 146
           LSIS L  L +FFL+     P   +    +G      +V  T +   + A L +N   P+
Sbjct: 270 LSISILLSLTVFFLLLAEIIPPTSLTVPLLGKYLLFTMVLVTLSVVVTIAVLNVNFRSPV 329

Query: 145 ESR 137
             R
Sbjct: 330 THR 332


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -1

Query: 451  VVXGKGSGSDQD 416
            V+ GKG GSD+D
Sbjct: 1607 VLRGKGHGSDKD 1618


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = +3

Query: 228  MYEVMIGGWGNAKSVIRKNRTKPDK 302
            ++   +G W  +K  +R  R KP K
Sbjct: 1017 VFRESVGAWAYSKYGLRFLRAKPGK 1041


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,747
Number of Sequences: 438
Number of extensions: 3655
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16195212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)