Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP07_F_F14
         (576 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    24   0.94 
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    24   1.2  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   2.9  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   2.9  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   2.9  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   5.0  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   6.6  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 24.2 bits (50), Expect = 0.94
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = +2

Query: 134 PPSRKPSLRTRRAPTP 181
           PPSRK S R RR  TP
Sbjct: 400 PPSRKESGRRRRRRTP 415


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +2

Query: 380 ASIIYLKVRTRGGGSVAPKPPXGWAAN 460
           A++ Y+ + T  GGS    P   WA N
Sbjct: 92  ATLTYISLDTNRGGSPKLTPYPNWAQN 118


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 238 QSLYSFGVAEKCLLFLLSVRC 176
           Q L S+ V+  CLLFL+   C
Sbjct: 443 QLLDSYAVSGFCLLFLMFFEC 463


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 238 QSLYSFGVAEKCLLFLLSVRC 176
           Q L S+ V+  CLLFL+   C
Sbjct: 496 QLLDSYAVSGFCLLFLMFFEC 516


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 13/43 (30%), Positives = 16/43 (37%)
 Frame = +3

Query: 90  SNSNKQNGGSSTFSIRHHGSRLFEHGVPRHRTESRNNKHFSAT 218
           S  N   G S   S  HHGS+ +         E+  N   S T
Sbjct: 389 SGENNSRGHSGQSSSHHHGSKSWTQEDMDAALEALRNHDMSLT 431



 Score = 21.0 bits (42), Expect = 8.7
 Identities = 12/42 (28%), Positives = 17/42 (40%)
 Frame = +3

Query: 39  NTQKKNNN*FELNEIVVSNSNKQNGGSSTFSIRHHGSRLFEH 164
           NT   NNN    N    +N    NG  +  S  ++   +F H
Sbjct: 234 NTNASNNNNNNNNNNNNNNGANDNGNGNGASNNNNNGDMFCH 275


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 7/21 (33%), Positives = 10/21 (47%)
 Frame = +3

Query: 171 PRHRTESRNNKHFSATPKEYN 233
           P H T    + H  ATP  ++
Sbjct: 414 PHHHTMGHGHSHIHATPHHHH 434


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 11/34 (32%), Positives = 14/34 (41%)
 Frame = +2

Query: 416  GGSVAPKPPXGWAANCPLPXPMGGSRSPKQGSLK 517
            G + A   P    AN P P   G    PK+G  +
Sbjct: 1008 GQAQAQAKPQSQEANKPKPATGGKGTRPKRGKYR 1041


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,929
Number of Sequences: 438
Number of extensions: 4335
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16626408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)