Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP07_F_E07
         (652 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       28   0.090
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    27   0.12 
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    25   0.63 
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    25   0.84 
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    25   0.84 
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      24   1.1  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    24   1.5  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           24   1.5  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    23   2.6  
AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin prepr...    23   2.6  
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    23   3.4  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   4.5  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   5.9  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   5.9  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   5.9  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 27.9 bits (59), Expect = 0.090
 Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
 Frame = +2

Query: 221 CSIPGCKHIADTLLDYENHYNATHRY---SCAQCKKVLPSPHFLDLHIQENHDSYFAVM 388
           C  PGC+ I +    +  H N  H     S AQ +  +     L++ +Q+  D   A+M
Sbjct: 283 CKWPGCEVICEDYQAFLKHLNTEHTLDDRSTAQARVRMQVVSQLEIQLQKERDRLTAMM 341


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 27.5 bits (58), Expect = 0.12
 Identities = 18/69 (26%), Positives = 31/69 (44%)
 Frame = +2

Query: 281 NATHRYSCAQCKKVLPSPHFLDLHIQENHDSYFAVMAEKKPSYCCYIEECKQKFNNTADR 460
           +A   ++C  C KVL S   L  H+ + H       AE++  Y C I  C++ + +    
Sbjct: 1   SAKKLFTCQLCGKVLCSKASLKRHVADKH-------AERQEEYRCVI--CERVYCSRNSL 51

Query: 461 LDHCVREHR 487
           + H    H+
Sbjct: 52  MTHIYTYHK 60



 Score = 24.2 bits (50), Expect = 1.1
 Identities = 11/35 (31%), Positives = 15/35 (42%)
 Frame = +2

Query: 269 ENHYNATHRYSCAQCKKVLPSPHFLDLHIQENHDS 373
           + H      Y C  C++V  S + L  HI   H S
Sbjct: 27  DKHAERQEEYRCVICERVYCSRNSLMTHIYTYHKS 61


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 25.0 bits (52), Expect = 0.63
 Identities = 23/80 (28%), Positives = 37/80 (46%)
 Frame = +2

Query: 296 YSCAQCKKVLPSPHFLDLHIQENHDSYFAVMAEKKPSYCCYIEECKQKFNNTADRLDHCV 475
           + C  C K+L S   L  HIQ  H         K+P   C I  CK+ +++     +H  
Sbjct: 3   FRCEPCNKILTSLTRLRRHIQNVH-----TRPSKEP--ICNI--CKRVYSSLNSLRNHKS 53

Query: 476 REHRIPKDFRFERQKKD*KQ 535
             HR  +  + E+Q+K+ +Q
Sbjct: 54  IYHR--QHSKNEQQRKEMEQ 71


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = +2

Query: 206 FKQTPCSIPGCKHIADTLLDYENHYNATHRYSCAQCKKVLPSPHFLDLHIQE 361
           FK   CS   C + +      ++H N  ++Y CA C       H L LH+++
Sbjct: 17  FKCEKCSY-SCVNKSMLNSHLKSHSNV-YQYRCANCTYATKYCHSLKLHLRK 66


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +2

Query: 296 YSCAQCKKVLPSPHFLDLHIQENHDS 373
           Y C  C +   S   ++LHI+ + DS
Sbjct: 260 YKCTLCHETFGSKKTMELHIKTHSDS 285


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 135 CLYMINNQLDLEFTMWTME 191
           C YM + +L   F++W ME
Sbjct: 341 CSYMAHEKLSYAFSVWRME 359


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -2

Query: 60  FGCQPFWNQLNFRRRQWLTA 1
           FG + FWN +NF   +  T+
Sbjct: 541 FGREDFWNSINFNENKLHTS 560


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -2

Query: 60  FGCQPFWNQLNFRRRQWLTA 1
           FG + FWN +NF   +  T+
Sbjct: 541 FGREDFWNSINFNENKLHTS 560


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 10/46 (21%), Positives = 26/46 (56%)
 Frame = -3

Query: 206 IGCYNFHRPHRKFQV*LVVYHV*TEHHEASVFLLHIL*ASPIEILH 69
           IGC+N H+P ++  + +V  +  T     ++ ++H+  ++ +  +H
Sbjct: 328 IGCWNEHQPLQRENMDMVAQNEETLQTVVAMKMMHLPQSNKMNRMH 373


>AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin
           preprohormone protein.
          Length = 107

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +2

Query: 188 GNYNTQFKQTPCSI 229
           GN N Q  QTPC +
Sbjct: 68  GNINNQLFQTPCEL 81


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 284 ATHRYSCAQCKKVLPSPHFLDLHIQ 358
           A   +SC  C+KV  S   L +HI+
Sbjct: 13  AKKSFSCKYCEKVYVSLGALKMHIR 37


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 555 VDESKSHKFHLNNSKQKTFSKNKYAG 632
           V+ SKS + ++   KQ     NKY G
Sbjct: 488 VNHSKSSRINIERMKQVYQQLNKYRG 513


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -3

Query: 638 FLSCIFIFAKRLLFAIV 588
           FLS  FIFA  + FA+V
Sbjct: 281 FLSFAFIFATIIQFAVV 297


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +2

Query: 227 IPGCKHIADTLLDYENHYNATHR 295
           +P  KH+A    D+ +    THR
Sbjct: 160 VPSVKHVAKCATDFSSWPYDTHR 182


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -3

Query: 425 LLCSSNTKASFRPSQQNTNRGSPVYAGLRNA 333
           L CS    A+ RP  +NT     ++  LRNA
Sbjct: 339 LFCSVVVIAADRPGLRNTELVERMHNKLRNA 369


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,183
Number of Sequences: 438
Number of extensions: 4202
Number of successful extensions: 35
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)