Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP07_F_D24
         (410 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    29   0.016
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    27   0.083
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    27   0.11 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   3.1  

>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 29.5 bits (63), Expect = 0.016
 Identities = 26/99 (26%), Positives = 35/99 (35%), Gaps = 4/99 (4%)
 Frame = +2

Query: 2   DFRXATVFQHVAQKIFSTPXMGLWDSIPKRGPVGHRGKVKAFPKDDPSKPVHLTAFIGYK 181
           D R AT +QH          MG + S      +GH G     P   PS P+   +     
Sbjct: 87  DMRNATYYQHQQDHGSGMDGMGGYRSASPSPGMGHMGHTPT-PNGHPSTPIVYASCKLQA 145

Query: 182 AGMTH---VVREPDRPGF-KNQQERDRGGCHHHRDSSDG 286
           A + H   V+  PD P   ++Q        H H     G
Sbjct: 146 AAVDHQGSVLDGPDSPPLVESQMHHQMHTQHPHMQPQQG 184


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 27.1 bits (57), Expect = 0.083
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -2

Query: 175 TDKSSQMNRFARVVFRERLDLTTMTDGTSFWDRI 74
           TDK S M+R  R+   +R+D    TD  S  DR+
Sbjct: 435 TDKMSSMDRMDRMDRVDRMDTMDRTDKMSSMDRM 468



 Score = 22.2 bits (45), Expect = 2.4
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -2

Query: 172 DKSSQMNRFARVVFRERLDLTTMTDGTSFWDRI 74
           D+  +M+R  R+   +R+D    TD  S  DR+
Sbjct: 484 DRMDRMDRMDRMDRMDRMDTMDRTDKMSRIDRM 516



 Score = 22.2 bits (45), Expect = 2.4
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -2

Query: 175 TDKSSQMNRFARVVFRERLDLTTMTD 98
           TDK S+++R  ++   +R+D T   D
Sbjct: 507 TDKMSRIDRMDKIDRMDRMDRTNRMD 532



 Score = 20.2 bits (40), Expect = 9.5
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = -2

Query: 175 TDKSSQMNRFARVVFRERLDLTTMTDGTSFWDRI 74
           TDK S M+R  R+   + +D     D     DR+
Sbjct: 459 TDKMSSMDRMDRMDRVDTMDTMDTMDRMDRMDRM 492


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 26.6 bits (56), Expect = 0.11
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 282 MVCVXCCWIH*DPSWTTRSVDCLG 353
           M C   C  + D +W T +VDC G
Sbjct: 759 MTCPAGCKCYNDRTWNTNAVDCSG 782


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 3.1
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -2

Query: 397  VFVEANVDSLQTYAPPRQSTERVVHEGSQCIQQHXTQTI 281
            +F++ +  S Q+    +Q  +RVV    Q IQ    Q I
Sbjct: 1047 IFIKQSPSSNQSQQIQQQQLKRVVTNQQQSIQTSGMQRI 1085


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,820
Number of Sequences: 438
Number of extensions: 2345
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10379628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)