Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP07_F_D07
         (653 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF015898-1|ABM64209.1|  586|Homo sapiens photolyase-like cryptoc...   139   7e-33
D84657-1|BAA12710.1|  586|Homo sapiens photolyase homolog protein.    139   7e-33
D83702-1|BAA12068.1|  586|Homo sapiens photolyase protein.            139   7e-33
BC030519-1|AAH30519.1|  586|Homo sapiens cryptochrome 1 (photoly...   139   7e-33
EF015899-1|ABM64210.1|  593|Homo sapiens photolyase-like cryptoc...   129   7e-30
BC041814-1|AAH41814.1|  593|Homo sapiens cryptochrome 2 (photoly...   129   7e-30
AB014558-1|BAA31633.1|  589|Homo sapiens KIAA0658 protein protein.    129   7e-30
AJ012793-1|CAB42642.1|  576|Homo sapiens lymphocyte adaptor prot...    34   0.51 
AF055581-1|AAC71695.1|  575|Homo sapiens adaptor protein Lnk pro...    34   0.51 
BC015937-1|AAH15937.1|  479|Homo sapiens poly(A) binding protein...    31   2.7  
AF013758-1|AAC39697.2|  479|Homo sapiens polyadenylate binding p...    31   2.7  
U27266-1|AAB86737.1|  477|Homo sapiens myosin binding protein H ...    30   6.3  
BC044226-1|AAH44226.1|  477|Homo sapiens myosin binding protein ...    30   6.3  
L32832-1|AAC14462.1| 3703|Homo sapiens zinc finger homeodomain p...    30   8.3  
D10250-1|BAA01095.1| 2783|Homo sapiens alpha-fetoprotein enhance...    30   8.3  
AC004943-1|AAC79153.1| 2553|Homo sapiens unknown protein.              30   8.3  

>EF015898-1|ABM64209.1|  586|Homo sapiens photolyase-like
           cryptochrome 1 protein.
          Length = 586

 Score =  139 bits (337), Expect = 7e-33
 Identities = 60/79 (75%), Positives = 69/79 (87%)
 Frame = +3

Query: 390 GKHTVHWFRKGLRIHDNPALREGIIDAVTFRCVFIIDPWFASSSNVGINKWRFLXQCLED 569
           G + VHWFRKGLR+HDNPAL+E I  A T RCV+I+DPWFA SSNVGIN+WRFL QCLED
Sbjct: 2   GVNAVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGINRWRFLLQCLED 61

Query: 570 LDKSLKKLNSRLFVVRGQP 626
           LD +L+KLNSRLFV+RGQP
Sbjct: 62  LDANLRKLNSRLFVIRGQP 80


>D84657-1|BAA12710.1|  586|Homo sapiens photolyase homolog protein.
          Length = 586

 Score =  139 bits (337), Expect = 7e-33
 Identities = 60/79 (75%), Positives = 69/79 (87%)
 Frame = +3

Query: 390 GKHTVHWFRKGLRIHDNPALREGIIDAVTFRCVFIIDPWFASSSNVGINKWRFLXQCLED 569
           G + VHWFRKGLR+HDNPAL+E I  A T RCV+I+DPWFA SSNVGIN+WRFL QCLED
Sbjct: 2   GVNAVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGINRWRFLLQCLED 61

Query: 570 LDKSLKKLNSRLFVVRGQP 626
           LD +L+KLNSRLFV+RGQP
Sbjct: 62  LDANLRKLNSRLFVIRGQP 80


>D83702-1|BAA12068.1|  586|Homo sapiens photolyase protein.
          Length = 586

 Score =  139 bits (337), Expect = 7e-33
 Identities = 60/79 (75%), Positives = 69/79 (87%)
 Frame = +3

Query: 390 GKHTVHWFRKGLRIHDNPALREGIIDAVTFRCVFIIDPWFASSSNVGINKWRFLXQCLED 569
           G + VHWFRKGLR+HDNPAL+E I  A T RCV+I+DPWFA SSNVGIN+WRFL QCLED
Sbjct: 2   GVNAVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGINRWRFLLQCLED 61

Query: 570 LDKSLKKLNSRLFVVRGQP 626
           LD +L+KLNSRLFV+RGQP
Sbjct: 62  LDANLRKLNSRLFVIRGQP 80


>BC030519-1|AAH30519.1|  586|Homo sapiens cryptochrome 1
           (photolyase-like) protein.
          Length = 586

 Score =  139 bits (337), Expect = 7e-33
 Identities = 60/79 (75%), Positives = 69/79 (87%)
 Frame = +3

Query: 390 GKHTVHWFRKGLRIHDNPALREGIIDAVTFRCVFIIDPWFASSSNVGINKWRFLXQCLED 569
           G + VHWFRKGLR+HDNPAL+E I  A T RCV+I+DPWFA SSNVGIN+WRFL QCLED
Sbjct: 2   GVNAVHWFRKGLRLHDNPALKECIQGADTIRCVYILDPWFAGSSNVGINRWRFLLQCLED 61

Query: 570 LDKSLKKLNSRLFVVRGQP 626
           LD +L+KLNSRLFV+RGQP
Sbjct: 62  LDANLRKLNSRLFVIRGQP 80


>EF015899-1|ABM64210.1|  593|Homo sapiens photolyase-like
           cryptochrome 2 protein.
          Length = 593

 Score =  129 bits (312), Expect = 7e-30
 Identities = 60/88 (68%), Positives = 69/88 (78%), Gaps = 3/88 (3%)
 Frame = +3

Query: 372 APRRTPGKHT---VHWFRKGLRIHDNPALREGIIDAVTFRCVFIIDPWFASSSNVGINKW 542
           AP   PG  +   VHWFRKGLR+HDNPAL   +  A   RCV+I+DPWFA+SS+VGIN+W
Sbjct: 12  APAPAPGTDSASSVHWFRKGLRLHDNPALLAAVRGARCVRCVYILDPWFAASSSVGINRW 71

Query: 543 RFLXQCLEDLDKSLKKLNSRLFVVRGQP 626
           RFL Q LEDLD SL+KLNSRLFVVRGQP
Sbjct: 72  RFLLQSLEDLDTSLRKLNSRLFVVRGQP 99


>BC041814-1|AAH41814.1|  593|Homo sapiens cryptochrome 2
           (photolyase-like) protein.
          Length = 593

 Score =  129 bits (312), Expect = 7e-30
 Identities = 60/88 (68%), Positives = 69/88 (78%), Gaps = 3/88 (3%)
 Frame = +3

Query: 372 APRRTPGKHT---VHWFRKGLRIHDNPALREGIIDAVTFRCVFIIDPWFASSSNVGINKW 542
           AP   PG  +   VHWFRKGLR+HDNPAL   +  A   RCV+I+DPWFA+SS+VGIN+W
Sbjct: 12  APAPAPGTDSASSVHWFRKGLRLHDNPALLAAVRGARCVRCVYILDPWFAASSSVGINRW 71

Query: 543 RFLXQCLEDLDKSLKKLNSRLFVVRGQP 626
           RFL Q LEDLD SL+KLNSRLFVVRGQP
Sbjct: 72  RFLLQSLEDLDTSLRKLNSRLFVVRGQP 99


>AB014558-1|BAA31633.1|  589|Homo sapiens KIAA0658 protein protein.
          Length = 589

 Score =  129 bits (312), Expect = 7e-30
 Identities = 60/88 (68%), Positives = 69/88 (78%), Gaps = 3/88 (3%)
 Frame = +3

Query: 372 APRRTPGKHT---VHWFRKGLRIHDNPALREGIIDAVTFRCVFIIDPWFASSSNVGINKW 542
           AP   PG  +   VHWFRKGLR+HDNPAL   +  A   RCV+I+DPWFA+SS+VGIN+W
Sbjct: 8   APAPAPGTDSASSVHWFRKGLRLHDNPALLAAVRGARCVRCVYILDPWFAASSSVGINRW 67

Query: 543 RFLXQCLEDLDKSLKKLNSRLFVVRGQP 626
           RFL Q LEDLD SL+KLNSRLFVVRGQP
Sbjct: 68  RFLLQSLEDLDTSLRKLNSRLFVVRGQP 95


>AJ012793-1|CAB42642.1|  576|Homo sapiens lymphocyte adaptor protein
           (Lnk) protein.
          Length = 576

 Score = 33.9 bits (74), Expect = 0.51
 Identities = 18/45 (40%), Positives = 23/45 (51%)
 Frame = +3

Query: 294 KMSAAPETLPPPSAQAHTPARPTHMSAPRRTPGKHTVHWFRKGLR 428
           K  A+PE  P P+A     AR +   AP R PG  +   FR+ LR
Sbjct: 99  KAEASPEPGPGPAAPGLPKARSSEELAPPRPPGPCSFQHFRRSLR 143


>AF055581-1|AAC71695.1|  575|Homo sapiens adaptor protein Lnk
           protein.
          Length = 575

 Score = 33.9 bits (74), Expect = 0.51
 Identities = 18/45 (40%), Positives = 23/45 (51%)
 Frame = +3

Query: 294 KMSAAPETLPPPSAQAHTPARPTHMSAPRRTPGKHTVHWFRKGLR 428
           K  A+PE  P P+A     AR +   AP R PG  +   FR+ LR
Sbjct: 99  KAEASPEPGPGPAAPGLPKARSSEELAPPRPPGPCSFQHFRRSLR 143


>BC015937-1|AAH15937.1|  479|Homo sapiens poly(A) binding protein
           interacting protein 1 protein.
          Length = 479

 Score = 31.5 bits (68), Expect = 2.7
 Identities = 13/27 (48%), Positives = 13/27 (48%)
 Frame = +3

Query: 309 PETLPPPSAQAHTPARPTHMSAPRRTP 389
           P T PPP AQ   PA P   S P   P
Sbjct: 62  PRTTPPPGAQCEVPASPQRPSRPGALP 88


>AF013758-1|AAC39697.2|  479|Homo sapiens polyadenylate binding
           protein-interacting protein-1 protein.
          Length = 479

 Score = 31.5 bits (68), Expect = 2.7
 Identities = 13/27 (48%), Positives = 13/27 (48%)
 Frame = +3

Query: 309 PETLPPPSAQAHTPARPTHMSAPRRTP 389
           P T PPP AQ   PA P   S P   P
Sbjct: 62  PRTTPPPGAQCEVPASPQRPSRPGALP 88


>U27266-1|AAB86737.1|  477|Homo sapiens myosin binding protein H
           protein.
          Length = 477

 Score = 30.3 bits (65), Expect = 6.3
 Identities = 16/56 (28%), Positives = 21/56 (37%)
 Frame = +3

Query: 285 IETKMSAAPETLPPPSAQAHTPARPTHMSAPRRTPGKHTVHWFRKGLRIHDNPALR 452
           IE   S AP    P +    TP   T +    R   K  + W +  + I  NP  R
Sbjct: 374 IERDFSEAPSFTQPLADHTSTPGYSTQLFCSVRASPKPKIIWMKNKMEIQGNPKYR 429


>BC044226-1|AAH44226.1|  477|Homo sapiens myosin binding protein H
           protein.
          Length = 477

 Score = 30.3 bits (65), Expect = 6.3
 Identities = 16/56 (28%), Positives = 21/56 (37%)
 Frame = +3

Query: 285 IETKMSAAPETLPPPSAQAHTPARPTHMSAPRRTPGKHTVHWFRKGLRIHDNPALR 452
           IE   S AP    P +    TP   T +    R   K  + W +  + I  NP  R
Sbjct: 374 IERDFSEAPSFTQPLADHTSTPGYSTQLFCSVRASPKPKIIWMKNKMEIQGNPKYR 429


>L32832-1|AAC14462.1| 3703|Homo sapiens zinc finger homeodomain
            protein protein.
          Length = 3703

 Score = 29.9 bits (64), Expect = 8.3
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 309  PETLPPPSAQAHTPARPTHMSAPRR 383
            P++ P PS  +H P +P H S P++
Sbjct: 2495 PQSSPSPSQLSHLPLKPLHTSTPQQ 2519


>D10250-1|BAA01095.1| 2783|Homo sapiens alpha-fetoprotein enhancer
            binding protein protein.
          Length = 2783

 Score = 29.9 bits (64), Expect = 8.3
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 309  PETLPPPSAQAHTPARPTHMSAPRR 383
            P++ P PS  +H P +P H S P++
Sbjct: 1581 PQSSPSPSQLSHLPLKPLHTSTPQQ 1605


>AC004943-1|AAC79153.1| 2553|Homo sapiens unknown protein.
          Length = 2553

 Score = 29.9 bits (64), Expect = 8.3
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 309  PETLPPPSAQAHTPARPTHMSAPRR 383
            P++ P PS  +H P +P H S P++
Sbjct: 1345 PQSSPSPSQLSHLPLKPLHTSTPQQ 1369


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,341,631
Number of Sequences: 237096
Number of extensions: 1650134
Number of successful extensions: 5752
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 5154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5728
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7310122300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)