Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP07_F_D07
         (653 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.    156   2e-40
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        27   0.16 
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        27   0.16 
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        27   0.16 
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   7.9  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score =  156 bits (379), Expect = 2e-40
 Identities = 65/86 (75%), Positives = 76/86 (88%)
 Frame = +3

Query: 390 GKHTVHWFRKGLRIHDNPALREGIIDAVTFRCVFIIDPWFASSSNVGINKWRFLXQCLED 569
           GKHTVHWFRKGLR+HDNP+LREG+  A TFRCVF++DPWFA S+N+GINKWRFL QCLED
Sbjct: 20  GKHTVHWFRKGLRLHDNPSLREGLAGASTFRCVFVLDPWFAGSTNIGINKWRFLLQCLED 79

Query: 570 LDKSLKKLNSRLFVVRGQPRGCVAKI 647
           LD SL+KLNSRLFV+RGQP   + K+
Sbjct: 80  LDCSLRKLNSRLFVIRGQPADALPKL 105


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 27.1 bits (57), Expect = 0.16
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +3

Query: 462 IDAVTFRCVFIIDPWFASSSNVGINKWRFLXQCLEDLDK 578
           IDA T  C +   PW    +N G+N    + + L DL K
Sbjct: 294 IDANTKPCTWAARPWQGYMTNNGVNNVEAVQKELTDLGK 332


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 27.1 bits (57), Expect = 0.16
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +3

Query: 462 IDAVTFRCVFIIDPWFASSSNVGINKWRFLXQCLEDLDK 578
           IDA T  C +   PW    +N G+N    + + L DL K
Sbjct: 294 IDANTKPCTWAARPWQGYMTNNGVNNVEAVQKELTDLGK 332


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 27.1 bits (57), Expect = 0.16
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +3

Query: 462 IDAVTFRCVFIIDPWFASSSNVGINKWRFLXQCLEDLDK 578
           IDA T  C +   PW    +N G+N    + + L DL K
Sbjct: 294 IDANTKPCTWAARPWQGYMTNNGVNNVEAVQKELTDLGK 332


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -2

Query: 496 IIKTHRNVTASIMPSR 449
           +I+  RNV  S+MP+R
Sbjct: 906 LIRPERNVRQSMMPTR 921


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,561
Number of Sequences: 438
Number of extensions: 3320
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)