Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP07_F_D03
         (632 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.81 
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    23   3.3  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   9.9  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    21   9.9  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.6 bits (51), Expect = 0.81
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +3

Query: 495  PHSTLYYERLRVVIINPIKNMYLESTDVYREKRTRLSAPCALRL 626
            PHSTL Y+     ++ P K    +S D  +E  T  +A  A  +
Sbjct: 1072 PHSTLEYKVKERHLMRPRKRDQKQSDDKTKETSTVTAAAAATNI 1115


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -2

Query: 190 AFDSIGEWVECVEILDGHTIER 125
           A  SI E+    E+L  HT+E+
Sbjct: 259 AMSSIAEFSVSTEVLQDHTLEK 280


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +3

Query: 525 RVVIINPIKNMYLESTDVYR 584
           R ++  PI N Y E+  +Y+
Sbjct: 773 RGILFMPIPNRYREAKQIYK 792


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +2

Query: 134 RMSIQNLNTFDPFADAIKSSE 196
           RM  +N+N FDP+       E
Sbjct: 225 RMVDENINGFDPYVKTPNDEE 245


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,693
Number of Sequences: 438
Number of extensions: 3620
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)