Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP07_F_C09
         (654 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              26   0.37 
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   2.6  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.4  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    23   3.4  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 25.8 bits (54), Expect = 0.37
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 77   KIMIENDISAWSPDDTLRILIASDIHLG 160
            +I+ EN+I A  P DT+ I+ A +   G
Sbjct: 951  RIVAENEIGASDPSDTVTIITAEEAPSG 978


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -1

Query: 276 SNRSPPKSIKSTSHCTARDKTSSKAIKLSSPRTGSFSMK 160
           SN   P+S +S S C+   K     I +S P T + + K
Sbjct: 318 SNNGSPRSPESNSRCSV--KREKIKISVSYPSTETLNTK 354



 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/19 (36%), Positives = 15/19 (78%)
 Frame = -3

Query: 481 LANGIIMIAVY*ENRVRNI 425
           L N ++++AVY  +++RN+
Sbjct: 81  LGNVLVILAVYHTSKLRNV 99


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +2

Query: 65   SCTSKIMIENDISAWSPDDTLRILIASDI 151
            SC  K + E  +S+W  D+  +++ ASD+
Sbjct: 927  SCRCKFLQE--LSSWVSDNAHKVVDASDV 953


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -1

Query: 84  IILLVQLDYDVISNNXKYNYADWRQ 10
           II  +  +Y+  +NN KYNY ++ +
Sbjct: 314 IISSLSNNYNYNNNNYKYNYNNYNK 338


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,430
Number of Sequences: 438
Number of extensions: 3852
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)