Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP07_F_B23
(653 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex det... 23 1.9
DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholi... 22 4.5
AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex det... 22 4.5
DQ325081-1|ABD14095.1| 186|Apis mellifera complementary sex det... 22 6.0
DQ325080-1|ABD14094.1| 184|Apis mellifera complementary sex det... 22 6.0
DQ325079-1|ABD14093.1| 184|Apis mellifera complementary sex det... 22 6.0
DQ325078-1|ABD14092.1| 184|Apis mellifera complementary sex det... 22 6.0
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 21 7.9
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 21 7.9
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 21 7.9
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 21 7.9
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 21 7.9
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 21 7.9
DQ067178-1|AAZ20250.1| 448|Apis mellifera conserved ATPase doma... 21 7.9
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 21 7.9
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 21 7.9
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 21 7.9
>AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex
determiner protein.
Length = 425
Score = 23.4 bits (48), Expect = 1.9
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -1
Query: 584 ISYL*EHAKFFIY*IHSNSFFNHKCNNGWYNTEYK 480
IS L + K+ Y ++N++ N+ N YN YK
Sbjct: 315 ISSLSNNYKYSNYNNYNNNYNNYNNYNNNYNNNYK 349
>DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholine
receptor alpha9subunit protein.
Length = 431
Score = 22.2 bits (45), Expect = 4.5
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = -1
Query: 203 TSDTLGSPITKCLIFS 156
T D G P T CL+FS
Sbjct: 138 TFDQTGIPPTTCLVFS 153
>AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex
determiner protein.
Length = 428
Score = 22.2 bits (45), Expect = 4.5
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = -1
Query: 542 IHSNSFFNHKCNNGWYNTEYK*NN 471
IH+N+ + + NN YN NN
Sbjct: 323 IHNNNNYKYNYNNNNYNNNNYNNN 346
>DQ325081-1|ABD14095.1| 186|Apis mellifera complementary sex
determiner protein.
Length = 186
Score = 21.8 bits (44), Expect = 6.0
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = -1
Query: 542 IHSNSFFNHKCNNGWYNTEYK 480
IH+N+ + + NN YN K
Sbjct: 90 IHNNNNYKYNYNNNNYNNNCK 110
>DQ325080-1|ABD14094.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 21.8 bits (44), Expect = 6.0
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = -1
Query: 542 IHSNSFFNHKCNNGWYNTEYK 480
IH+N+ + + NN YN K
Sbjct: 90 IHNNNNYKYNYNNNNYNNNCK 110
>DQ325079-1|ABD14093.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 21.8 bits (44), Expect = 6.0
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = -1
Query: 542 IHSNSFFNHKCNNGWYNTEYK 480
IH+N+ + + NN YN K
Sbjct: 90 IHNNNNYKYNYNNNNYNNNCK 110
>DQ325078-1|ABD14092.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 21.8 bits (44), Expect = 6.0
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = -1
Query: 542 IHSNSFFNHKCNNGWYNTEYK 480
IH+N+ + + NN YN K
Sbjct: 90 IHNNNNYKYNYNNNNYNNNCK 110
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 21.4 bits (43), Expect = 7.9
Identities = 5/12 (41%), Positives = 11/12 (91%)
Frame = +1
Query: 55 KKNTVFYFFNIV 90
++ T++YFFN++
Sbjct: 191 RRRTLYYFFNLI 202
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 21.4 bits (43), Expect = 7.9
Identities = 5/12 (41%), Positives = 11/12 (91%)
Frame = +1
Query: 55 KKNTVFYFFNIV 90
++ T++YFFN++
Sbjct: 191 RRRTLYYFFNLI 202
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 21.4 bits (43), Expect = 7.9
Identities = 5/12 (41%), Positives = 11/12 (91%)
Frame = +1
Query: 55 KKNTVFYFFNIV 90
++ T++YFFN++
Sbjct: 191 RRRTLYYFFNLI 202
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 21.4 bits (43), Expect = 7.9
Identities = 5/12 (41%), Positives = 11/12 (91%)
Frame = +1
Query: 55 KKNTVFYFFNIV 90
++ T++YFFN++
Sbjct: 191 RRRTLYYFFNLI 202
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 21.4 bits (43), Expect = 7.9
Identities = 5/12 (41%), Positives = 11/12 (91%)
Frame = +1
Query: 55 KKNTVFYFFNIV 90
++ T++YFFN++
Sbjct: 191 RRRTLYYFFNLI 202
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 21.4 bits (43), Expect = 7.9
Identities = 5/12 (41%), Positives = 11/12 (91%)
Frame = +1
Query: 55 KKNTVFYFFNIV 90
++ T++YFFN++
Sbjct: 191 RRRTLYYFFNLI 202
>DQ067178-1|AAZ20250.1| 448|Apis mellifera conserved ATPase domain
protein protein.
Length = 448
Score = 21.4 bits (43), Expect = 7.9
Identities = 8/20 (40%), Positives = 9/20 (45%)
Frame = -1
Query: 539 HSNSFFNHKCNNGWYNTEYK 480
HSN K GW EY+
Sbjct: 27 HSNQLIIDKSLKGWKEVEYE 46
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.4 bits (43), Expect = 7.9
Identities = 5/12 (41%), Positives = 11/12 (91%)
Frame = +1
Query: 55 KKNTVFYFFNIV 90
++ T++YFFN++
Sbjct: 259 RRRTLYYFFNLI 270
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.4 bits (43), Expect = 7.9
Identities = 5/12 (41%), Positives = 11/12 (91%)
Frame = +1
Query: 55 KKNTVFYFFNIV 90
++ T++YFFN++
Sbjct: 259 RRRTLYYFFNLI 270
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 21.4 bits (43), Expect = 7.9
Identities = 5/12 (41%), Positives = 11/12 (91%)
Frame = +1
Query: 55 KKNTVFYFFNIV 90
++ T++YFFN++
Sbjct: 228 RRRTLYYFFNLI 239
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,183
Number of Sequences: 438
Number of extensions: 3879
Number of successful extensions: 18
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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