Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP06_F_P15
         (654 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          29   0.030
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      29   0.030
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    28   0.091
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   1.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   1.1  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   4.5  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        21   7.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   7.9  

>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 29.5 bits (63), Expect = 0.030
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +2

Query: 95  PTIKLNNGIEFPALGYGTWLGLNDKMEFEITDARKLQDALSYAIDIGY 238
           PT++  NG+ FP    G  + L+  M+  +     L   +S AID+GY
Sbjct: 296 PTMRFRNGLAFPQRETGATVPLH--MQKYVQMIHDLHTRISTAIDLGY 341


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 29.5 bits (63), Expect = 0.030
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +2

Query: 95  PTIKLNNGIEFPALGYGTWLGLNDKMEFEITDARKLQDALSYAIDIGY 238
           PT++  NG+ FP    G  + L+  M+  +     L   +S AID+GY
Sbjct: 296 PTMRFRNGLAFPQRETGATVPLH--MQKYVQMIHDLHTRISTAIDLGY 341


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 27.9 bits (59), Expect = 0.091
 Identities = 12/58 (20%), Positives = 33/58 (56%)
 Frame = +2

Query: 455 PMSISQEGVDENIDYLETWRGFEEVLKKGLTRSIGVSNFNIEQMKRLLANCNVPPAVN 628
           P+++    + E+   +   + ++ +   GLT+++ + N+NI+  K +L++ +  P V+
Sbjct: 69  PLAVDSVKIGESQGSVTLRQEYKNIKLYGLTKNLEIKNYNIDWDKCILSSESYNPQVD 126


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +1

Query: 448  ALANVDLARRGRRKYRLPGDVE 513
            ++ +V   RR +RK + PGDVE
Sbjct: 1760 SMKSVSSRRRQQRKQQTPGDVE 1781


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +1

Query: 448  ALANVDLARRGRRKYRLPGDVE 513
            ++ +V   RR +RK + PGDVE
Sbjct: 1756 SMKSVSSRRRQQRKQQTPGDVE 1777


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 6/16 (37%), Positives = 8/16 (50%)
 Frame = +3

Query: 423 WSTWTWYWCTGQCRSR 470
           W  + W W  G C+ R
Sbjct: 95  WQQYPWQWGLGICKLR 110


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = +2

Query: 338 FVTTKVWHHHHKQADVEVA 394
           +V+    HHHH+Q     A
Sbjct: 91  YVSAAAAHHHHQQQQAVAA 109


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/24 (29%), Positives = 12/24 (50%)
 Frame = -3

Query: 349 CSNKNVFAFDNTVLNFFIYNFPDL 278
           C   N F  D+T +N  +   P++
Sbjct: 855 CVATNAFGSDDTSINMIVQEVPEV 878


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,464
Number of Sequences: 438
Number of extensions: 4167
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)