Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP06_F_M23
         (385 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    23   1.2  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    23   1.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   2.1  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   2.1  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   3.7  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   3.7  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    21   4.9  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    21   4.9  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          20   8.6  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          20   8.6  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          20   8.6  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          20   8.6  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          20   8.6  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          20   8.6  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          20   8.6  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    20   8.6  

>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 23.0 bits (47), Expect = 1.2
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +3

Query: 315 RLMNCFV*SMMLRADSQSTVSPP 383
           + +  FV +++ R D+QS + PP
Sbjct: 135 QFLKAFVAAVLTRQDTQSVIFPP 157


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 23.0 bits (47), Expect = 1.2
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = -1

Query: 376 DTVDCESALNIID*TKQFISLLN*DNIHKSSRIS 275
           +TV C+ A++++      + +++ DNIH    IS
Sbjct: 386 NTVTCQEAMHMLKNADSQLLVISDDNIHIKGVIS 419


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 2.1
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +2

Query: 185 RLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPA 286
           R K+ LTG   L   K RL+  +      P +P+
Sbjct: 182 RTKHRLTGETRLSATKGRLVITEPVGSVRPKFPS 215


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 22.2 bits (45), Expect = 2.1
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -2

Query: 195 YFRRFLRKITRGKHSRNLWGPVDGLGAYTPPSLS 94
           Y R  +R  T  +H ++    +DG+G Y   S S
Sbjct: 83  YNRMDMRNATYYQHQQDHGSGMDGMGGYRSASPS 116


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.4 bits (43), Expect = 3.7
 Identities = 14/53 (26%), Positives = 25/53 (47%)
 Frame = +2

Query: 203 TGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRF 361
           T +++    + R+ ++   VRT    P GF D+V  +K  E   L   +  R+
Sbjct: 733 TMSQMPPTAQPRMERLAEAVRTASQIPQGFKDLVQ-KKCEERGILFMPIPNRY 784


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.4 bits (43), Expect = 3.7
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = +1

Query: 73  RSQSMDVGQTWRCVCTETVNRSPQVARVLAPGDFPE 180
           +S++ DV ++WR +  E  NR+    R++    + E
Sbjct: 261 QSETYDVLRSWRNLMDEHSNRTNSDPRMILTEAYTE 296


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 10/40 (25%), Positives = 21/40 (52%)
 Frame = +2

Query: 227 VKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYD 346
           VKQ ++ V+    TDP Y     + +  E ++ + ++ Y+
Sbjct: 145 VKQLIVGVNKMDMTDPPYSEARFEEIKKEVSSYIKKIGYN 184


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +2

Query: 44  GPKKHLKRLNAP 79
           GPK+HL+ L  P
Sbjct: 336 GPKEHLRSLGIP 347


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 206 RSKHTSDDSSGKSPGASTRAT 144
           RSK  S +S G+S  ++T  T
Sbjct: 76  RSKSRSPESRGRSNASNTSKT 96


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 206 RSKHTSDDSSGKSPGASTRAT 144
           RSK  S +S G+S  ++T  T
Sbjct: 76  RSKSRSPESRGRSNASNTSKT 96


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 206 RSKHTSDDSSGKSPGASTRAT 144
           RSK  S +S G+S  ++T  T
Sbjct: 76  RSKSRSPESRGRSNASNTSKT 96


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 206 RSKHTSDDSSGKSPGASTRAT 144
           RSK  S +S G+S  ++T  T
Sbjct: 76  RSKSRSPESRGRSNASNTSKT 96


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 206 RSKHTSDDSSGKSPGASTRAT 144
           RSK  S +S G+S  ++T  T
Sbjct: 76  RSKSRSPESRGRSNASNTSKT 96


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 206 RSKHTSDDSSGKSPGASTRAT 144
           RSK  S +S G+S  ++T  T
Sbjct: 76  RSKSRSPESRGRSNASNTSKT 96


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 206 RSKHTSDDSSGKSPGASTRAT 144
           RSK  S +S G+S  ++T  T
Sbjct: 76  RSKSRSPESRGRSNASNTSKT 96


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 206 RSKHTSDDSSGKSPGASTRAT 144
           RSK  S +S G+S  ++T  T
Sbjct: 76  RSKSRSPESRGRSNASNTSKT 96


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,238
Number of Sequences: 438
Number of extensions: 2120
Number of successful extensions: 16
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9424380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)