Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP06_F_M19
         (520 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee homeobox-...    24   1.1  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   1.4  
M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee homeobox-...    23   2.5  
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          21   5.7  
DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex det...    21   5.7  
DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex det...    21   5.7  
DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex det...    21   5.7  
DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex det...    21   5.7  
DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex det...    21   5.7  

>M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E30. ).
          Length = 109

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 7/67 (10%)
 Frame = +2

Query: 311 RRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAILRSQRPI-------KAKKAKD 469
           +RP  A +   L ++KR    N Y T+  +  L R   +  +Q  I       K KKA  
Sbjct: 21  KRPRTAFSAEQLARLKREFAENRYLTERRRQQLSRDLGLTEAQIKIWFQNKRAKIKKASG 80

Query: 470 SRNQVGI 490
            +N + +
Sbjct: 81  QKNPLAL 87


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +2

Query: 383 RTDLCKATLRRASAILRSQRPIKAKKAKDSRNQVGII--W*ALNKFL 517
           R++L +A L+R         PI+ +  K S    GI+  W A +++L
Sbjct: 764 RSELVEAILKRVQTPFDPDVPIELQIQKQSHTPNGIVKTWIAHDRYL 810


>M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E60. ).
          Length = 109

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 7/67 (10%)
 Frame = +2

Query: 311 RRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAILRSQRPI-------KAKKAKD 469
           +RP  A +   L ++KR    N Y T+  +  L R   +  +Q  I       K KKA  
Sbjct: 21  KRPRTAFSGEQLARLKREFAENRYLTERRRQQLSRDLGLNEAQIKIWFQNKRAKIKKASG 80

Query: 470 SRNQVGI 490
            +N + +
Sbjct: 81  QKNPLAL 87


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +2

Query: 119 LXKKRNIKKPFSKEP 163
           L KKRN   PF K P
Sbjct: 14  LLKKRNENDPFLKRP 28


>DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -1

Query: 280 LCFLVHYCESLPVRV 236
           LC+ ++Y E +PV V
Sbjct: 102 LCYNINYIEQIPVPV 116


>DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -1

Query: 280 LCFLVHYCESLPVRV 236
           LC+ ++Y E +PV V
Sbjct: 102 LCYNINYIEQIPVPV 116


>DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -1

Query: 280 LCFLVHYCESLPVRV 236
           LC+ ++Y E +PV V
Sbjct: 102 LCYNINYIEQIPVPV 116


>DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -1

Query: 280 LCFLVHYCESLPVRV 236
           LC+ ++Y E +PV V
Sbjct: 102 LCYNINYIEQIPVPV 116


>DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -1

Query: 280 LCFLVHYCESLPVRV 236
           LC+ ++Y E +PV V
Sbjct: 102 LCYNINYIEQIPVPV 116


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,972
Number of Sequences: 438
Number of extensions: 2647
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14477538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)