Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP06_F_L10
         (537 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              26   0.28 
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    26   0.28 
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    23   1.5  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    23   2.0  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   2.6  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             23   2.6  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    22   4.6  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   6.0  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    21   8.0  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   8.0  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 25.8 bits (54), Expect = 0.28
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 336 VRGLDPIIKLLDKDGIVKDTVAIEKWNTDSVEEFL 440
           +RG   I+K +     V D V +  W+TD  EEF+
Sbjct: 115 IRGNSAILKCV-VPSFVADFVKVLSWHTDQGEEFV 148


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 25.8 bits (54), Expect = 0.28
 Identities = 16/70 (22%), Positives = 29/70 (41%)
 Frame = +3

Query: 237 LEVCTCKFPAYPQIQAFVKSDRPAKFPNLQIKYVRGLDPIIKLLDKDGIVKDTVAIEKWN 416
           + V    +  Y     F K  +  +   L ++ +   D +  L+DK    K    IE W+
Sbjct: 1   MNVLHIHYQHYHITPVFTKQKKVKEDTELNLQTIFNEDKLDNLMDKQFKNKSLPVIEIWD 60

Query: 417 TDSVEEFLNT 446
             +V+E  N+
Sbjct: 61  QMTVKELANS 70


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = -1

Query: 237 IWLERISFLLKLIHL 193
           +WL++I  LL++IHL
Sbjct: 5   MWLQQIFILLQMIHL 19


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = +3

Query: 120 CSSCDQLKDFSLEQLVDHCKECCHSD 197
           C  CD++++    Q +  C+   HSD
Sbjct: 328 CLDCDEIRESLDTQFLQVCRSRRHSD 353


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +3

Query: 33  AVLVTYDGAVAEFSTEDCASLGFIK 107
           AV+  +DG V   +   C +LG++K
Sbjct: 166 AVISMHDGLVLYTTPSICTALGYLK 190


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +3

Query: 33  AVLVTYDGAVAEFSTEDCASLGFIK 107
           AV+  +DG V   +   C +LG++K
Sbjct: 161 AVISMHDGLVLYTTPSICTALGYLK 185


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = -1

Query: 456 YRDEYSKILLLNQCSIFRWLRYLLQCHPYQV 364
           Y  E S  + +     F   RYL  CHP +V
Sbjct: 119 YVSEMSSYVSVLTIVAFSMERYLAICHPLRV 149


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 10/29 (34%), Positives = 12/29 (41%)
 Frame = +3

Query: 408 KWNTDSVEEFLNTHLDKEHDDEPDFLKTN 494
           KWN D        H+  EH   PD +  N
Sbjct: 83  KWNPDDYGGVDTLHVPSEHIWLPDIVLYN 111


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = +3

Query: 135 QLKDFSLEQLVDHCKECCHSDESASKEK 218
           +L+D  +   +++  E C  DE+ + EK
Sbjct: 508 KLEDLEMGTPLENILESCQQDETHAPEK 535


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = -2

Query: 494 VCFQEIRFIVVF 459
           VCF +++FI+ F
Sbjct: 81  VCFNDLKFIIEF 92


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,197
Number of Sequences: 438
Number of extensions: 2720
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15213684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)