Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP06_F_K03
         (652 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    27   0.21 
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    25   0.84 
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    23   2.6  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    23   2.6  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    23   3.4  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 26.6 bits (56), Expect = 0.21
 Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +3

Query: 228 CDDVYQTGANTCVKLYYI-KKHGGFYKVKT 314
           C  VY TG  TC+++ ++ K+  G+Y   T
Sbjct: 222 CTQVYSTGNFTCLEVVFVLKRRLGYYLFHT 251


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 13/54 (24%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = +2

Query: 2   IQN*FXVESHISFKSNYLKYYNYNVDF--QFIHLKNNF*FMKK*RVKSSVNFYC 157
           + N +   ++ ++ +NY  Y NYN ++   +  L  N  ++++  V   V  YC
Sbjct: 318 LSNNYKYSNYNNYNNNYNNYNNYNNNYNNNYKKLYYNINYIEQIPVPVPVPIYC 371


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 53  LKYYNYNVDFQFIHLKNNF*FMK 121
           +KYY+Y  DF F     NF F+K
Sbjct: 295 MKYYDYGADFPF-----NFAFIK 312


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 53  LKYYNYNVDFQFIHLKNNF*FMK 121
           +KYY+Y  DF F     NF F+K
Sbjct: 295 MKYYDYGADFPF-----NFAFIK 312


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/57 (17%), Positives = 26/57 (45%)
 Frame = -3

Query: 308 YFVKTAVFFNVVQFYTSIRACLIHVIAKVQEVLIHIREHIHRKIFLEFYAHNKSSPN 138
           Y  + + + ++ Q+   +  CL +    +  +L ++    +R  F E    + S+P+
Sbjct: 283 YVYEDSTYDDINQWVYPLTGCLYYFSTTINPILYNVMSAKYRNAFKETCRCSPSNPS 339


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,516
Number of Sequences: 438
Number of extensions: 2735
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)