Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP06_F_J01
         (602 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    23   3.0  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   3.0  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   5.3  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    22   5.3  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   7.0  

>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 11/33 (33%), Positives = 14/33 (42%)
 Frame = +2

Query: 152 PXKVKPEHDDNGVKIQENTFGIRDPMIAGLGAT 250
           P  V  +H D+  K  E  F + DP     G T
Sbjct: 334 PPGVPGDHGDHAPKQTEVRFKVHDPKAHSKGGT 366


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 11/33 (33%), Positives = 14/33 (42%)
 Frame = +2

Query: 152 PXKVKPEHDDNGVKIQENTFGIRDPMIAGLGAT 250
           P  V  +H D+  K  E  F + DP     G T
Sbjct: 334 PPGVPGDHGDHAPKQTEVRFKVHDPKAHSKGGT 366


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +2

Query: 269 VHPLEASEKNYHLNEEKLNLAMLRN 343
           +  + A EKN     +K+N+A LR+
Sbjct: 240 IQAVAAHEKNMREQAKKMNVASLRS 264


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +2

Query: 269 VHPLEASEKNYHLNEEKLNLAMLRN 343
           +  + A EKN     +K+N+A LR+
Sbjct: 116 IQAVAAHEKNMREQAKKMNVASLRS 140


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +1

Query: 517 RSATRCHREITWTSL 561
           R+ATRC   I W+ L
Sbjct: 121 RNATRCIGRIQWSKL 135


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,069
Number of Sequences: 438
Number of extensions: 3154
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17726685
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)