Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP06_F_I10
         (657 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    23   3.4  
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    22   5.9  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    22   5.9  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    22   5.9  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    21   7.8  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    21   7.8  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   7.8  

>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = -1

Query: 102 SNLISISRRFSHTH*FKNYNNS 37
           SN  S+S  +++ + + NYNN+
Sbjct: 83  SNNNSLSNNYNYNNNYNNYNNN 104


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -1

Query: 621 LIITTRNKITQSHIRLFLI 565
           +I +T  KIT+  IR+FLI
Sbjct: 65  IIKSTNEKITRYIIRMFLI 83


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -1

Query: 621 LIITTRNKITQSHIRLFLI 565
           +I +T  KIT+  IR+FLI
Sbjct: 48  IIKSTNEKITRYIIRMFLI 66


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -1

Query: 120 GVGTF-KSNLISISRRFSHTH*FKNYNNSSLIQTKQQ 13
           GVG F +  L+ I+   S +   K    + +++T+QQ
Sbjct: 374 GVGGFGRVELVQIAGDSSRSFALKQMKKAQIVETRQQ 410


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/15 (46%), Positives = 13/15 (86%)
 Frame = +1

Query: 385 GVFRRYWNIFFELSS 429
           G+FRR++N+  +LS+
Sbjct: 551 GLFRRFYNLLGKLST 565


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 316 LNKTNFYGLIINMFNNVS 369
           L +  F G+I N+F N+S
Sbjct: 403 LERERFLGIINNIFKNMS 420


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 316 LNKTNFYGLIINMFNNVS 369
           L +  F G+I N+F N+S
Sbjct: 403 LERERFLGIINNIFKNMS 420


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,174
Number of Sequences: 438
Number of extensions: 4077
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)