Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP06_F_H17
         (616 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    27   0.15 
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    24   1.0  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   4.1  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   4.1  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   5.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   5.5  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   9.6  

>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 27.1 bits (57), Expect = 0.15
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -1

Query: 214 WKISNNIWYTFRCYPPQCSFNV 149
           W+I+NN++Y    YPP  +FN+
Sbjct: 219 WRITNNLFYP---YPPYGTFNI 237


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -2

Query: 396 QSRPYPNLPPRGKMD 352
           Q  PYP  PP  +MD
Sbjct: 73  QDMPYPRFPPYNRMD 87


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -1

Query: 418 SCLSEGRPISPLP 380
           SCL  G P+ PLP
Sbjct: 433 SCLIHGPPLPPLP 445


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -1

Query: 418 SCLSEGRPISPLP 380
           SCL  G P+ PLP
Sbjct: 433 SCLIHGPPLPPLP 445


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +1

Query: 334 TYTQSSIHFASWWKIG 381
           T+ Q+  HF +W+K G
Sbjct: 356 THPQAGPHFITWYKDG 371


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +1

Query: 334 TYTQSSIHFASWWKIG 381
           T+ Q+  HF +W+K G
Sbjct: 356 THPQAGPHFITWYKDG 371


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = +2

Query: 215 KEKNELSATHKLLFSPRTVGLEITEKPQISRVKQDP 322
           +  + L   HK+L   ++  ++  E  QIS+ K  P
Sbjct: 241 RHSSTLDIDHKMLTPIKSEPIDAYEMHQISKKKLSP 276


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,592
Number of Sequences: 438
Number of extensions: 2904
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)