Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP06_F_H08
         (461 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   3.7  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   4.9  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   6.5  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    21   8.5  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +2

Query: 191 LRQHSNLLKNIQTYQDYQHH 250
           L  H+NLL N+ +     HH
Sbjct: 398 LASHNNLLNNVYSTPGPHHH 417


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 9/35 (25%), Positives = 20/35 (57%)
 Frame = +1

Query: 223 SDISGLPAPYMDRHSKLYFSNAEEFATVRNLPMDI 327
           + ++ L   Y D H+KL  +  E+  T +++ +D+
Sbjct: 542 TQVAELDQIYADTHAKLVQAAFEQNTTDQSMDIDV 576


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +1

Query: 196  PTFKPIKKYSDISGLPAP 249
            P  KP K ++   G+P P
Sbjct: 1124 PQLKPQKPFTSPGGIPGP 1141



 Score = 20.6 bits (41), Expect = 8.5
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +1

Query: 280  SNAEEFATVRNLPMDITAGYLQLRGAN 360
            SN+   A +  +P D++ G     GAN
Sbjct: 1254 SNSRGAAQMSKVPRDVSEGIYDGSGAN 1280


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 20.6 bits (41), Expect = 8.5
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +3

Query: 171 FILFNKCSANIQTY 212
           F L  +CS N++TY
Sbjct: 148 FYLIIECSLNLETY 161


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,710
Number of Sequences: 438
Number of extensions: 2977
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12312900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)