Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP06_F_G19
(656 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 31 0.15
SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat protei... 31 0.19
SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces... 29 0.59
SPBC13E7.10c |brf1|SPBC30D10.20|transcription factor TFIIIB comp... 28 1.0
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 28 1.4
SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosac... 27 1.8
SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit Dpb3|Schizosa... 27 2.4
SPAC664.01c |swi6|SPAC824.10c|chromodomain protein Swi6|Schizosa... 27 3.1
SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces ... 27 3.1
SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces pomb... 27 3.1
SPBC3B8.03 |||saccharopine dehydrogenase |Schizosaccharomyces po... 26 4.2
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 26 4.2
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 26 4.2
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch... 26 4.2
SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|... 26 5.5
SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyce... 26 5.5
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 26 5.5
SPAC3F10.03 |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr... 25 7.3
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu... 25 9.6
SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos... 25 9.6
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 25 9.6
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 31.1 bits (67), Expect = 0.15
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +2
Query: 437 KRKHSRATSSSDNPSDTSEEKKKNKHRSKRSFRDKDGTDKN 559
KR S+D + ++KK+KH K+ +DK DK+
Sbjct: 52 KRSVEELKRSADEEASVKRKEKKSKHEHKKHKKDKPSADKD 92
Score = 29.1 bits (62), Expect = 0.59
Identities = 12/49 (24%), Positives = 26/49 (53%)
Frame = +2
Query: 365 IQKLKICLTRPPSTPERAERSPRQKRKHSRATSSSDNPSDTSEEKKKNK 511
+++LK S + ++S + +KH + S+D + ++KKK+K
Sbjct: 55 VEELKRSADEEASVKRKEKKSKHEHKKHKKDKPSADKDRISKKDKKKSK 103
Score = 25.8 bits (54), Expect = 5.5
Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = +2
Query: 410 ERAERSPRQKRKHSRATSSSDNPS-DTSEEKKKNKHRSKR 526
E + + +K KH D PS D KK+K +SK+
Sbjct: 65 EASVKRKEKKSKHEHKKHKKDKPSADKDRISKKDKKKSKK 104
>SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 586
Score = 30.7 bits (66), Expect = 0.19
Identities = 26/90 (28%), Positives = 38/90 (42%), Gaps = 2/90 (2%)
Frame = +2
Query: 287 KEENVDESPDQVWQVKTAEGSGDGGEIQKLKICLTRPPSTPERAERSPRQKRKHSRATSS 466
+E+NV +V V ++ SG G + KL+ PP+TP R + QKR T
Sbjct: 10 REDNVSVHSREV-SVNGSD-SGTGNDAYKLETDDEHPPATPVRGLSTRSQKRPFRPLTIQ 67
Query: 467 SDN--PSDTSEEKKKNKHRSKRSFRDKDGT 550
D +DT + N S +D T
Sbjct: 68 QDEDVENDTGMNTEYNDDNSSLVNTPRDST 97
>SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 745
Score = 29.1 bits (62), Expect = 0.59
Identities = 21/53 (39%), Positives = 28/53 (52%)
Frame = +2
Query: 386 LTRPPSTPERAERSPRQKRKHSRATSSSDNPSDTSEEKKKNKHRSKRSFRDKD 544
L R P+ + AE+ + +RK S +SS TSEE N+H SKRS D
Sbjct: 411 LFRAPTIQKPAEKDAKAERKKSGLSSS------TSEESL-NRHISKRSSNSND 456
>SPBC13E7.10c |brf1|SPBC30D10.20|transcription factor TFIIIB complex
subunit Brf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 500
Score = 28.3 bits (60), Expect = 1.0
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +2
Query: 422 RSPRQKRKHSRATSSSDNPSDTSEEKKKNKHRSKRSFRDK 541
R PR++R++ S+SD +DT+ E K + +R+F K
Sbjct: 447 RQPRKRRRYRPRDSTSDGIADTAAESAK-EMMQQRAFSKK 485
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 27.9 bits (59), Expect = 1.4
Identities = 14/31 (45%), Positives = 21/31 (67%)
Frame = -3
Query: 411 SGVDGGRVKQILSFCISPPSPDPSAVLTCQT 319
SG++ R+K SF +S PSP PS ++T Q+
Sbjct: 316 SGLES-RIKPDQSFNLSTPSPAPSNLITLQS 345
>SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 376
Score = 27.5 bits (58), Expect = 1.8
Identities = 17/58 (29%), Positives = 28/58 (48%)
Frame = +2
Query: 365 IQKLKICLTRPPSTPERAERSPRQKRKHSRATSSSDNPSDTSEEKKKNKHRSKRSFRD 538
++K K L + ER R + R+ SDN +S+ K +H S+RS+R+
Sbjct: 154 MEKRKYSLDSDRKSKERRHRDRHHRSNQDRSRERSDNEQHSSD---KREH-SRRSYRN 207
>SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit
Dpb3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 199
Score = 27.1 bits (57), Expect = 2.4
Identities = 13/50 (26%), Positives = 24/50 (48%)
Frame = +2
Query: 395 PPSTPERAERSPRQKRKHSRATSSSDNPSDTSEEKKKNKHRSKRSFRDKD 544
P + P +AER ++ R A N S +++ KKN + + +D +
Sbjct: 103 PDAPPIKAERKTKRPRARRAANEGEHNESVPAKKVKKNTVKEEEIEKDDE 152
>SPAC664.01c |swi6|SPAC824.10c|chromodomain protein
Swi6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 328
Score = 26.6 bits (56), Expect = 3.1
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Frame = +2
Query: 356 GGEIQKLKICLTRPPSTPERAERSPRQKR----KHSRATSSSDNPSDTSEEKKKNKHRSK 523
GG + K T P PE E SP+ ++ KH + S++ D +E+ K +S+
Sbjct: 136 GGRPEPSKRKRTARPKKPEAKEPSPKSRKTDEDKHDK--DSNEKIEDVNEKTIKFADKSQ 193
Query: 524 RSFRD 538
F +
Sbjct: 194 EEFNE 198
>SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 634
Score = 26.6 bits (56), Expect = 3.1
Identities = 16/51 (31%), Positives = 22/51 (43%)
Frame = +2
Query: 392 RPPSTPERAERSPRQKRKHSRATSSSDNPSDTSEEKKKNKHRSKRSFRDKD 544
RP A R Q+ K + T +D PS +E+ KN K D+D
Sbjct: 458 RPKVNAGLASRLSYQENKLRKKTGVTDGPSILEDERFKNVFTDKEFEVDED 508
>SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 508
Score = 26.6 bits (56), Expect = 3.1
Identities = 9/38 (23%), Positives = 19/38 (50%)
Frame = +2
Query: 413 RAERSPRQKRKHSRATSSSDNPSDTSEEKKKNKHRSKR 526
+ E+ ++ +KH ++ S+ D KKK K + +
Sbjct: 470 KKEKKEKKDKKHKKSKRKSEESEDGESPKKKKKSKKSK 507
>SPBC3B8.03 |||saccharopine dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 450
Score = 26.2 bits (55), Expect = 4.2
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -3
Query: 399 GGRVKQILSFCISPPSPDPS 340
GG++K LS+C P+P+ S
Sbjct: 144 GGKIKSFLSYCGGLPAPEDS 163
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 26.2 bits (55), Expect = 4.2
Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 1/74 (1%)
Frame = +2
Query: 311 PDQVWQVKTAEGSGDGGEIQKLKICLTRPPSTPER-AERSPRQKRKHSRATSSSDNPSDT 487
PD K+ S G+ L ++ S +R ++ R + KH S D
Sbjct: 565 PDTEGDAKSPPSSSKSGQGSSLSRRASKHESKHKRDSKHEARPESKHESHRESKSAEKD- 623
Query: 488 SEEKKKNKHRSKRS 529
++KK K SKRS
Sbjct: 624 KKDKKDKKEDSKRS 637
Score = 25.4 bits (53), Expect = 7.3
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +2
Query: 395 PPSTPERAERSPRQKRKHSRATSSS 469
PP+TP + R P S TSSS
Sbjct: 275 PPATPSQPPRPPTNASTRSTGTSSS 299
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 26.2 bits (55), Expect = 4.2
Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Frame = +2
Query: 419 ERSPRQKRKHSRATSSSDNP-SDTSEEKKKNKHRSKRSFRDKDGTDKN 559
E S + K+K ++ + D P D KK+ K R S + + D +
Sbjct: 172 ESSEKDKKKKKKSKENDDAPKKDRKTRKKEEKARKLASMLESENKDND 219
>SPCC663.03 |pmd1||leptomycin efflux transporter
Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1362
Score = 26.2 bits (55), Expect = 4.2
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -3
Query: 168 LVFFAFSTFTSGEAFAFL 115
LVFFA +TF SG AF+
Sbjct: 220 LVFFAIATFVSGFVIAFI 237
>SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|chr
2|||Manual
Length = 643
Score = 25.8 bits (54), Expect = 5.5
Identities = 16/65 (24%), Positives = 27/65 (41%)
Frame = +2
Query: 353 DGGEIQKLKICLTRPPSTPERAERSPRQKRKHSRATSSSDNPSDTSEEKKKNKHRSKRSF 532
D G+I++ +TR T A + + H+ ++ SSD D R+ R+
Sbjct: 61 DNGDIEQDMPPVTRLQPTSPMAVNAASDEASHASSSDSSDKNPDIPSSPLLMNSRALRAS 120
Query: 533 RDKDG 547
R G
Sbjct: 121 RGSSG 125
>SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 642
Score = 25.8 bits (54), Expect = 5.5
Identities = 11/47 (23%), Positives = 27/47 (57%)
Frame = +2
Query: 407 PERAERSPRQKRKHSRATSSSDNPSDTSEEKKKNKHRSKRSFRDKDG 547
P++ + +K+K++ ++ SS++ S + +KKK+ ++ D G
Sbjct: 29 PKKVDSFSPKKKKNTTSSGSSESDSMSQNDKKKDSSLNESEDEDFAG 75
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 25.8 bits (54), Expect = 5.5
Identities = 12/44 (27%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = +2
Query: 401 STPERAERS-PRQKRKHSRATSSSDNPSDTSEEKKKNKHRSKRS 529
S+PE +++S +QK+ + SSS++ S++S + ++ S
Sbjct: 62 SSPEPSKKSVKKQKKSKKKEESSSESESESSSSESESSSSESES 105
>SPAC3F10.03 |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 652
Score = 25.4 bits (53), Expect = 7.3
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +2
Query: 443 KHSRATSSSDNPSDTSEEKK-KNKHRSKRSFRDKDGT 550
K +R +S+D P ++ ++KK K K + R+ R D T
Sbjct: 121 KEARGQNSNDQPEESDDKKKRKKKVKEIRATRLDDKT 157
>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1405
Score = 25.0 bits (52), Expect = 9.6
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +2
Query: 440 RKHSRATSSSDNPSDTSEEKKKNKHRSKRSFRDKDG 547
R+H+ A + D + S KKK+K++ F + G
Sbjct: 801 RRHAEAFGAEDGLQEESLGKKKDKYKGGLVFEPQKG 836
>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 607
Score = 25.0 bits (52), Expect = 9.6
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Frame = +2
Query: 425 SPRQKRKHSRATSSSDNPSDTSEEK---KKNKHRSKRSFRDKDG 547
SP KRKH + DTS K + + +R++ KDG
Sbjct: 82 SPSVKRKHVNGEGAEKGDHDTSNNGPSITKLRRKVRRTYDTKDG 125
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 25.0 bits (52), Expect = 9.6
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -2
Query: 460 SSSRMFPFLTRRSFSTFWCRWRTC*ANFE 374
S S + PFLT ++ CR R+C + ++
Sbjct: 390 SGSGVLPFLTNGGCYSYICRSRSCPSKYQ 418
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,230,762
Number of Sequences: 5004
Number of extensions: 41903
Number of successful extensions: 203
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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