Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP06_F_G08
         (653 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    23   3.4  
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    23   3.4  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    22   4.5  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    22   4.5  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       22   6.0  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    21   7.9  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    21   7.9  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    21   7.9  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    21   7.9  

>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -2

Query: 646 LTISGSFLNKFWLSGAHF 593
           LT+SG F  K W+    F
Sbjct: 106 LTLSGDFAEKIWVPDTFF 123


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 123 ISEIKNNYTNNKYMGKLKFRPVH 191
           IS + NNY  N Y     ++P+H
Sbjct: 315 ISSLSNNYNYNNYNN--NYKPLH 335


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 138 NNYTNNKYMGKLKFRPVH 191
           NNY NN Y  KL +  ++
Sbjct: 101 NNYNNNNYNKKLYYNIIN 118


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 138 NNYTNNKYMGKLKFRPVH 191
           NNY NN Y  KL +  ++
Sbjct: 101 NNYNNNNYNKKLYYNIIN 118


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/31 (25%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = -1

Query: 185 RAKFKFTHVFVVCVIIFYFAYIRYLI--LWF 99
           RAK +   + V+ + +F+  +  Y +  LW+
Sbjct: 253 RAKIRTLKMTVIIIAVFFICWTPYYVMSLWY 283


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +2

Query: 443 TDKSMNSRTHSGEDSKNRK 499
           T KS  SRT   E  KNR+
Sbjct: 43  TKKSQGSRTTHNELEKNRR 61


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +3

Query: 135 KNNYTNNKYMGKLKFR 182
           K NY NN Y  KL ++
Sbjct: 103 KYNYNNNNYNKKLYYK 118


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 11/53 (20%), Positives = 24/53 (45%)
 Frame = +3

Query: 381 WQAVIKKGDLNMKNLRTRLQLLINP*TLELTVEKTQKTERSSNQMLKMKGNYF 539
           W+A+ K   +NM+      Q+  +  T  +      +    +N++L++ G  F
Sbjct: 22  WEAIKKDAAVNMEGQFLVRQIYDDEITYNIISAAVNRLNIPANEILELFGRMF 74


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 11/53 (20%), Positives = 24/53 (45%)
 Frame = +3

Query: 381 WQAVIKKGDLNMKNLRTRLQLLINP*TLELTVEKTQKTERSSNQMLKMKGNYF 539
           W+A+ K   +NM+      Q+  +  T  +      +    +N++L++ G  F
Sbjct: 22  WEAIKKDAAVNMEGQFLVRQIYDDEITYNIISAAVNRLNIPANEILELFGRMF 74


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,811
Number of Sequences: 438
Number of extensions: 3075
Number of successful extensions: 34
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)