Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP06_F_G03
         (655 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    22   4.5  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   6.0  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       21   7.9  

>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = -3

Query: 176 LKKLPEILICSQRTTTTLFPSRRTL 102
           LK L + L+C ++ +TT+ P+ + +
Sbjct: 68  LKLLSDGLMCVEKVSTTIVPTTQEI 92


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = -2

Query: 594 RLXHLXTSILGDPXKFLFIGNSLNSLALPXVFKLTNNIT 478
           R+  L    + D  + LFI N+  +L  P  F    N+T
Sbjct: 606 RITELSPLSVPDSVELLFINNNYINLVRPNTFTDKVNLT 644


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 12/44 (27%), Positives = 18/44 (40%)
 Frame = -3

Query: 308 SVLCGIMPLTVFHRILDGALKWKGPRAGFTLHLLRRNDISLSLF 177
           SV+C +    VFH      + W      F       ++I+ SLF
Sbjct: 164 SVVCSLPQTIVFHLETHPNVTWYSQCVTFNAFPTYTHEITYSLF 207


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,134
Number of Sequences: 438
Number of extensions: 3796
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)