Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP06_F_F24
         (637 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC003581-1|AAH03581.1|  101|Homo sapiens ubiquitin related modif...   132   1e-30
AL359091-10|CAI13493.1|  101|Homo sapiens ubiquitin related modi...   132   1e-30
AL359091-9|CAI13492.1|   63|Homo sapiens ubiquitin related modif...    71   3e-12

>BC003581-1|AAH03581.1|  101|Homo sapiens ubiquitin related modifier
           1 homolog (S. cerevisiae) protein.
          Length = 101

 Score =  132 bits (318), Expect = 1e-30
 Identities = 63/109 (57%), Positives = 81/109 (74%)
 Frame = +2

Query: 263 MAETLTVEVMFGGGAELLFNKVKRKEITLPSLKTFLPDSQNLNWTLKELLIWLKDNLLVE 442
           MA  L+VEV FGGGAELLF+ +K+  +TLP         Q   W ++ LLIW+K NLL E
Sbjct: 1   MAAPLSVEVEFGGGAELLFDGIKKHRVTLPG--------QEEPWDIRNLLIWIKKNLLKE 52

Query: 443 REELFLKDDSVRPGILVLINEEDWELHGQLNYELKENDKIMFISTLHGG 589
           R ELF++ DSVRPGILVLIN+ DWEL G+L+Y+L++ D ++FISTLHGG
Sbjct: 53  RPELFIQGDSVRPGILVLINDADWELLGELDYQLQDQDSVLFISTLHGG 101


>AL359091-10|CAI13493.1|  101|Homo sapiens ubiquitin related
           modifier 1 homolog (S. cerevisiae) protein.
          Length = 101

 Score =  132 bits (318), Expect = 1e-30
 Identities = 63/109 (57%), Positives = 81/109 (74%)
 Frame = +2

Query: 263 MAETLTVEVMFGGGAELLFNKVKRKEITLPSLKTFLPDSQNLNWTLKELLIWLKDNLLVE 442
           MA  L+VEV FGGGAELLF+ +K+  +TLP         Q   W ++ LLIW+K NLL E
Sbjct: 1   MAAPLSVEVEFGGGAELLFDGIKKHRVTLPG--------QEEPWDIRNLLIWIKKNLLKE 52

Query: 443 REELFLKDDSVRPGILVLINEEDWELHGQLNYELKENDKIMFISTLHGG 589
           R ELF++ DSVRPGILVLIN+ DWEL G+L+Y+L++ D ++FISTLHGG
Sbjct: 53  RPELFIQGDSVRPGILVLINDADWELLGELDYQLQDQDSVLFISTLHGG 101


>AL359091-9|CAI13492.1|   63|Homo sapiens ubiquitin related modifier
           1 homolog (S. cerevisiae) protein.
          Length = 63

 Score = 71.3 bits (167), Expect = 3e-12
 Identities = 37/71 (52%), Positives = 47/71 (66%)
 Frame = +2

Query: 263 MAETLTVEVMFGGGAELLFNKVKRKEITLPSLKTFLPDSQNLNWTLKELLIWLKDNLLVE 442
           MA  L+VEV FGGGAELLF+ +K+  +TLP         Q   W ++ LLIW+K NLL E
Sbjct: 1   MAAPLSVEVEFGGGAELLFDGIKKHRVTLP--------GQEEPWDIRNLLIWIKKNLLKE 52

Query: 443 REELFLKDDSV 475
           R ELF++ DSV
Sbjct: 53  RPELFIQGDSV 63


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,407,546
Number of Sequences: 237096
Number of extensions: 1548416
Number of successful extensions: 2620
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2617
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6972732040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)