Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP06_F_F17
         (653 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   2.6  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    22   4.5  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           22   4.5  
AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex det...    21   7.9  
AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex det...    21   7.9  
AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex det...    21   7.9  
AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex det...    21   7.9  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   7.9  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = -2

Query: 310 HKQFSFNSRHIQVKRAVSDTVFCSYVSSWFCLVSSSLRCCIPCPP 176
           H+  S    H +    +S++ + SYV+S +   +     C P PP
Sbjct: 356 HQTQSLQHLHYRQPPTLSES-YSSYVNSMYASGAQFATPCTPSPP 399


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = -3

Query: 411 NPNEGTINYLH 379
           NPNE +++YLH
Sbjct: 516 NPNEKSLHYLH 526


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = -3

Query: 411 NPNEGTINYLH 379
           NPNE +++YLH
Sbjct: 516 NPNEKSLHYLH 526


>AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -3

Query: 615 IFNYTLHTNAHYKDLYLCN 559
           + N T+H N +YK L   N
Sbjct: 307 LLNNTIHNNNNYKKLQYYN 325


>AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -3

Query: 615 IFNYTLHTNAHYKDLYLCN 559
           + N T+H N +YK L   N
Sbjct: 318 LLNNTIHNNNNYKKLQYYN 336


>AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -3

Query: 615 IFNYTLHTNAHYKDLYLCN 559
           + N T+H N +YK L   N
Sbjct: 318 LLNNTIHNNNNYKKLQYYN 336


>AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -3

Query: 615 IFNYTLHTNAHYKDLYLCN 559
           + N T+H N +YK L   N
Sbjct: 307 LLNNTIHNNNNYKKLQYYN 325


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +3

Query: 135  RAAAPTEALSSTAPGGQ 185
            R  APT   SS +PG Q
Sbjct: 1275 RVIAPTTITSSQSPGNQ 1291


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,923
Number of Sequences: 438
Number of extensions: 3495
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)