Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP06_F_F14
(378 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC132972-1|AAI32973.1| 297|Homo sapiens ribosomal protein L5 pr... 202 4e-52
BC132970-1|AAI32971.1| 297|Homo sapiens ribosomal protein L5 pr... 202 4e-52
BC109370-1|AAI09371.1| 297|Homo sapiens ribosomal protein L5 pr... 202 4e-52
AL162740-1|CAI22505.1| 297|Homo sapiens ribosomal protein L5 pr... 202 4e-52
AK222604-1|BAD96324.1| 297|Homo sapiens ribosomal protein L5 va... 202 4e-52
AB208980-1|BAD92217.1| 303|Homo sapiens ribosomal protein L5 va... 202 4e-52
U14966-1|AAA85654.1| 297|Homo sapiens ribosomal protein L5 prot... 200 2e-51
BC001882-1|AAH01882.1| 101|Homo sapiens RPL5 protein protein. 190 1e-48
AL162740-2|CAI22506.1| 126|Homo sapiens ribosomal protein L5 pr... 99 4e-21
BC020205-1|AAH20205.1| 554|Homo sapiens Unknown (protein for IM... 29 6.6
AJ417593-1|CAD10391.2| 4169|Homo sapiens ALMS1 protein protein. 28 8.8
>BC132972-1|AAI32973.1| 297|Homo sapiens ribosomal protein L5
protein.
Length = 297
Score = 202 bits (492), Expect = 4e-52
Identities = 89/105 (84%), Positives = 100/105 (95%)
Frame = +1
Query: 64 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 243
MGFVKVVKNK YFKRYQVKF+RRREGKTDYYARKRLV+QDKNKYNTPKYR+IVR++N+D+
Sbjct: 1 MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDI 60
Query: 244 TCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAXYSTGLLL 378
CQ+AY+RIEGD IVCAAY+HELP+YGVKVGLTNYAA Y TGLLL
Sbjct: 61 ICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLL 105
>BC132970-1|AAI32971.1| 297|Homo sapiens ribosomal protein L5
protein.
Length = 297
Score = 202 bits (492), Expect = 4e-52
Identities = 89/105 (84%), Positives = 100/105 (95%)
Frame = +1
Query: 64 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 243
MGFVKVVKNK YFKRYQVKF+RRREGKTDYYARKRLV+QDKNKYNTPKYR+IVR++N+D+
Sbjct: 1 MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDI 60
Query: 244 TCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAXYSTGLLL 378
CQ+AY+RIEGD IVCAAY+HELP+YGVKVGLTNYAA Y TGLLL
Sbjct: 61 ICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLL 105
>BC109370-1|AAI09371.1| 297|Homo sapiens ribosomal protein L5
protein.
Length = 297
Score = 202 bits (492), Expect = 4e-52
Identities = 89/105 (84%), Positives = 100/105 (95%)
Frame = +1
Query: 64 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 243
MGFVKVVKNK YFKRYQVKF+RRREGKTDYYARKRLV+QDKNKYNTPKYR+IVR++N+D+
Sbjct: 1 MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDI 60
Query: 244 TCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAXYSTGLLL 378
CQ+AY+RIEGD IVCAAY+HELP+YGVKVGLTNYAA Y TGLLL
Sbjct: 61 ICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLL 105
>AL162740-1|CAI22505.1| 297|Homo sapiens ribosomal protein L5
protein.
Length = 297
Score = 202 bits (492), Expect = 4e-52
Identities = 89/105 (84%), Positives = 100/105 (95%)
Frame = +1
Query: 64 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 243
MGFVKVVKNK YFKRYQVKF+RRREGKTDYYARKRLV+QDKNKYNTPKYR+IVR++N+D+
Sbjct: 1 MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDI 60
Query: 244 TCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAXYSTGLLL 378
CQ+AY+RIEGD IVCAAY+HELP+YGVKVGLTNYAA Y TGLLL
Sbjct: 61 ICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLL 105
>AK222604-1|BAD96324.1| 297|Homo sapiens ribosomal protein L5
variant protein.
Length = 297
Score = 202 bits (492), Expect = 4e-52
Identities = 89/105 (84%), Positives = 100/105 (95%)
Frame = +1
Query: 64 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 243
MGFVKVVKNK YFKRYQVKF+RRREGKTDYYARKRLV+QDKNKYNTPKYR+IVR++N+D+
Sbjct: 1 MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDI 60
Query: 244 TCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAXYSTGLLL 378
CQ+AY+RIEGD IVCAAY+HELP+YGVKVGLTNYAA Y TGLLL
Sbjct: 61 ICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLL 105
>AB208980-1|BAD92217.1| 303|Homo sapiens ribosomal protein L5
variant protein.
Length = 303
Score = 202 bits (492), Expect = 4e-52
Identities = 89/105 (84%), Positives = 100/105 (95%)
Frame = +1
Query: 64 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 243
MGFVKVVKNK YFKRYQVKF+RRREGKTDYYARKRLV+QDKNKYNTPKYR+IVR++N+D+
Sbjct: 8 MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDI 67
Query: 244 TCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAXYSTGLLL 378
CQ+AY+RIEGD IVCAAY+HELP+YGVKVGLTNYAA Y TGLLL
Sbjct: 68 ICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLL 112
>U14966-1|AAA85654.1| 297|Homo sapiens ribosomal protein L5
protein.
Length = 297
Score = 200 bits (487), Expect = 2e-51
Identities = 88/105 (83%), Positives = 99/105 (94%)
Frame = +1
Query: 64 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 243
MGFVKVVKNK YFKRYQVKF+RRREGKTDYYARKRLV+QDKNKYNTPKYR+IVR++N+D+
Sbjct: 1 MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDI 60
Query: 244 TCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAXYSTGLLL 378
CQ+AY+RIEGD IVCA Y+HELP+YGVKVGLTNYAA Y TGLLL
Sbjct: 61 ICQIAYARIEGDMIVCARYAHELPKYGVKVGLTNYAAAYCTGLLL 105
>BC001882-1|AAH01882.1| 101|Homo sapiens RPL5 protein protein.
Length = 101
Score = 190 bits (463), Expect = 1e-48
Identities = 83/97 (85%), Positives = 94/97 (96%)
Frame = +1
Query: 64 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 243
MGFVKVVKNK YFKRYQVKF+RRREGKTDYYARKRLV+QDKNKYNTPKYR+IVR++N+D+
Sbjct: 1 MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDI 60
Query: 244 TCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAA 354
CQ+AY+RIEGD IVCAAY+HELP+YGVKVGLTNYAA
Sbjct: 61 ICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAA 97
>AL162740-2|CAI22506.1| 126|Homo sapiens ribosomal protein L5
protein.
Length = 126
Score = 99.1 bits (236), Expect = 4e-21
Identities = 42/55 (76%), Positives = 51/55 (92%)
Frame = +1
Query: 214 LIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAXYSTGLLL 378
+IVR++N+D+ CQ+AY+RIEGD IVCAAY+HELP+YGVKVGLTNYAA Y TGLLL
Sbjct: 1 MIVRVTNRDIICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLL 55
>BC020205-1|AAH20205.1| 554|Homo sapiens Unknown (protein for
IMAGE:4857480) protein.
Length = 554
Score = 28.7 bits (61), Expect = 6.6
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = -1
Query: 189 VLVLNNEAFTSIIISFPFTTPLEFYLVPLEVLFVLHNFNESHILNL-SYKVASTDRTTKL 13
+L L+ T I+ P E Y V + LF H +E + L + VAS + TK
Sbjct: 484 LLCLDCLNITRIVSGCPLPEACELYYVNRDTLFCYHKASEVFLQRLMALYVASHYKNTKK 543
Query: 12 KRK 4
K+K
Sbjct: 544 KKK 546
>AJ417593-1|CAD10391.2| 4169|Homo sapiens ALMS1 protein protein.
Length = 4169
Score = 28.3 bits (60), Expect = 8.8
Identities = 19/70 (27%), Positives = 33/70 (47%)
Frame = +1
Query: 70 FVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTC 249
F+ + KNK K+ ++ +R + +KR ++K K YRL +L K VT
Sbjct: 4102 FLAIQKNKPISKKEMIQRSKRIYEQLPEVQKKR--EEEKRKSEYKSYRLRAQLYKKRVTN 4159
Query: 250 QVAYSRIEGD 279
Q+ ++ D
Sbjct: 4160 QLLGRKVPWD 4169
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 58,792,743
Number of Sequences: 237096
Number of extensions: 1251210
Number of successful extensions: 2282
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2282
length of database: 76,859,062
effective HSP length: 81
effective length of database: 57,654,286
effective search space used: 2536788584
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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