Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP06_F_F12
         (505 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...   264   5e-73
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   1.4  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          21   5.5  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          21   5.5  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          21   5.5  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          21   5.5  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          21   5.5  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          21   5.5  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          21   5.5  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    21   5.5  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   5.5  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   5.5  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   5.5  
AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    21   5.5  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   9.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   9.6  

>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score =  264 bits (646), Expect = 5e-73
 Identities = 124/134 (92%), Positives = 129/134 (96%)
 Frame = +1

Query: 79  MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 258
           MAIRPVYRPTIVKKRTK+FIRHQSDRY KLKRNWRKP+GIDNRVRRRFKGQYLMPNIGYG
Sbjct: 1   MAIRPVYRPTIVKKRTKKFIRHQSDRYSKLKRNWRKPKGIDNRVRRRFKGQYLMPNIGYG 60

Query: 259 SNKKTRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIR 438
           SNKKTRHMLP GFRKVLVHNVKELE+LMMQNRK+CAEIAHG SSKKRK IVERAQQLSIR
Sbjct: 61  SNKKTRHMLPTGFRKVLVHNVKELEVLMMQNRKFCAEIAHGGSSKKRKSIVERAQQLSIR 120

Query: 439 VTNAAARLRSQENE 480
           VT A+ARLRSQENE
Sbjct: 121 VTYASARLRSQENE 134


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 14/61 (22%), Positives = 28/61 (45%)
 Frame = +1

Query: 235 LMPNIGYGSNKKTRHMLPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVE 414
           L   +  G   + +  +P+G+   +   + EL  L +  + +   + HG+    R LIV+
Sbjct: 66  LAAKVWNGQYARVQQSMPDGWETEISDQMLELRDLPISGKPFQIRMKHGLI---RDLIVD 122

Query: 415 R 417
           R
Sbjct: 123 R 123


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 348 KQEVLRRDRSWCLFEEAEAD 407
           ++E LRR R W + +E E +
Sbjct: 32  QEERLRRRREWMIQQERERE 51


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 348 KQEVLRRDRSWCLFEEAEAD 407
           ++E LRR R W + +E E +
Sbjct: 32  QEERLRRRREWMIQQERERE 51


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 348 KQEVLRRDRSWCLFEEAEAD 407
           ++E LRR R W + +E E +
Sbjct: 32  QEERLRRRREWMIQQERERE 51


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 348 KQEVLRRDRSWCLFEEAEAD 407
           ++E LRR R W + +E E +
Sbjct: 32  QEERLRRRREWMIQQERERE 51


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 348 KQEVLRRDRSWCLFEEAEAD 407
           ++E LRR R W + +E E +
Sbjct: 32  QEERLRRRREWMIQQERERE 51


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 348 KQEVLRRDRSWCLFEEAEAD 407
           ++E LRR R W + +E E +
Sbjct: 32  QEERLRRRREWMIQQERERE 51


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 348 KQEVLRRDRSWCLFEEAEAD 407
           ++E LRR R W + +E E +
Sbjct: 32  QEERLRRRREWMIQQERERE 51


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 348 KQEVLRRDRSWCLFEEAEAD 407
           ++E LRR R W + +E E +
Sbjct: 32  QEERLRRRREWMIQQERERE 51


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -2

Query: 501 LIIQLYLFILLGAEASGRI 445
           L +  +LF++   ++SGRI
Sbjct: 15  LFVNSFLFVIAAQDSSGRI 33


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -2

Query: 501 LIIQLYLFILLGAEASGRI 445
           L +  +LF++   ++SGRI
Sbjct: 15  LFVNSFLFVIAAQDSSGRI 33


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -2

Query: 501 LIIQLYLFILLGAEASGRI 445
           L +  +LF++   ++SGRI
Sbjct: 15  LFVNSFLFVIAAQDSSGRI 33


>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 18  FSCGRVTAXVHCRVSKRNIQDGY 86
           F+ GRV A +  R  +   +DGY
Sbjct: 166 FATGRVLACISSRPGQCGREDGY 188


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -2

Query: 357  LPVLHHQDFQLFNI 316
            LP L H D Q FN+
Sbjct: 1031 LPELRHGDIQGFNV 1044


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -2

Query: 357  LPVLHHQDFQLFNI 316
            LP L H D Q FN+
Sbjct: 1027 LPELRHGDIQGFNV 1040


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,567
Number of Sequences: 438
Number of extensions: 2855
Number of successful extensions: 16
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13864083
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)