Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP06_F_F09
         (641 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    24   1.1  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    23   3.3  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   4.4  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    21   7.7  
AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding prote...    21   7.7  
AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced prot...    21   7.7  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    21   7.7  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 11/43 (25%), Positives = 22/43 (51%)
 Frame = -2

Query: 316 ILLIDQINLLSQTLWRGICRSPRTCPCSLSALTTGTTCGDRPP 188
           ++ +D+   +++ L  G+ R+PR     +S +  G  C   PP
Sbjct: 134 MISVDRFCAITKPLKYGVKRTPRRMIVYVSLVWLGAACISLPP 176


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 18/56 (32%), Positives = 23/56 (41%)
 Frame = +3

Query: 405 TMGRTVPSPQFGIDRSATAGVGGGPS*RAQSVRGRAVARREQTEDVLATRRSHPAG 572
           T     P+P      SA AG  GG      +  G+  AR   ++D LA   S P G
Sbjct: 46  TTAAATPTPPSVPVGSAVAGTAGGALFPGMAAAGKGAAR---SDDWLANANS-PVG 97


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 12/43 (27%), Positives = 18/43 (41%)
 Frame = -3

Query: 354 SDIHFEPS*HHNTSS*LTK*IYYHKHCGEEFAAAPGHVHVVSL 226
           ++++  P  HH+T       I+   H     AA P H H   L
Sbjct: 406 NNVYSTPGPHHHTMGHGHSHIHATPHHHHSHAATPHHQHSTPL 448


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 10/29 (34%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = +3

Query: 207 VVPVVR--AERLHGHVLGLRQIPRHNVCD 287
           V+ +V+  A++LHG  + +R +   N CD
Sbjct: 146 VIGIVKTVAKKLHGTDIEMRILKTKNECD 174


>AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding protein
           ASP5 protein.
          Length = 143

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 115 ADQVIRKGKNVLPTVARLCLISTFLEDGLR 204
           ADQV +  KN+  +  +   I+  L DG+R
Sbjct: 26  ADQVEKLAKNMRKSCLQKIAITEELVDGMR 55


>AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 87

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = -2

Query: 244 CPCSLSALTTGTTC 203
           C C L+   TGT C
Sbjct: 5   CECDLATPRTGTNC 18


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 10/29 (34%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = +3

Query: 207 VVPVVR--AERLHGHVLGLRQIPRHNVCD 287
           V+ +V+  A++LHG  + +R +   N CD
Sbjct: 146 VIGIVKTVAKKLHGTDIEMRILKTKNECD 174


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,997
Number of Sequences: 438
Number of extensions: 4161
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)