Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP06_F_F08
         (553 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    22   4.8  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    22   4.8  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    22   4.8  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    22   4.8  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                21   6.3  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   8.3  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            21   8.3  

>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = +1

Query: 448 REQTTDSDEGSQMNYKDVWSQ 510
           REQ +  +E S   Y++ W +
Sbjct: 45  REQKSYKNENSYRKYRETWKE 65


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = +1

Query: 448 REQTTDSDEGSQMNYKDVWSQ 510
           REQ +  +E S   Y++ W +
Sbjct: 45  REQKSYKNENSYRKYRETWKE 65


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = +1

Query: 448 REQTTDSDEGSQMNYKDVWSQ 510
           REQ +  +E S   Y++ W +
Sbjct: 45  REQKSYKNENSYRKYRETWKE 65


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = +1

Query: 448 REQTTDSDEGSQMNYKDVWSQ 510
           REQ +  +E S   Y++ W +
Sbjct: 45  REQKSYKNENSYRKYRETWKE 65


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = +1

Query: 490 YKDVWSQNVDQ 522
           YK +WSQN+ +
Sbjct: 289 YKQMWSQNITE 299


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 6/11 (54%), Positives = 7/11 (63%)
 Frame = -1

Query: 496 LCNSFESLHHC 464
           LCN+    HHC
Sbjct: 466 LCNTLHHWHHC 476


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -2

Query: 321 CEDRWRCIFHFER 283
           CE RWR I++  R
Sbjct: 380 CEHRWRQIYNMVR 392


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,642
Number of Sequences: 438
Number of extensions: 2662
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15827139
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)