Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP06_F_E08
         (523 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    23   1.9  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    22   3.3  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    22   4.4  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   5.8  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            21   7.7  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +3

Query: 351 DGEAVEFAVVAGEKGFEAAG 410
           DG+ V    VA E GF+  G
Sbjct: 81  DGQQVSITYVADENGFQVQG 100


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 336 VRSVGDGEAVEFAVVAGEKGFEAAGVTGPR 425
           +R +GD  AV  ++  G  G   AG + PR
Sbjct: 3   LRCIGDMGAVMTSLTLGPAGQVLAGSSSPR 32


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 9/27 (33%), Positives = 12/27 (44%)
 Frame = +2

Query: 233 FNVKSGYGFINRNDTKVRCVCASDCHR 313
           F+  SGY  I +  T     C   CH+
Sbjct: 19  FDKCSGYPSIRQGTTSYCLGCGDSCHK 45


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 514 SSATLTREILAVVATALVC 458
           S  T+TR + AVV T  +C
Sbjct: 254 SRKTITRMLSAVVITFFIC 272


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -1

Query: 97  VIGERRWWQRW 65
           VI +R WW+R+
Sbjct: 70  VIDKRPWWERY 80


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,539
Number of Sequences: 438
Number of extensions: 2239
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)