Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP06_F_D06
         (472 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    23   1.6  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    21   5.0  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    21   5.0  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   8.8  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   8.8  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   8.8  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
 Frame = -2

Query: 291 DSVCPSA-CVVFEGGTV*C*VP--VQTPKC 211
           D   PS  C+VF  GT+ C VP    TP C
Sbjct: 131 DLEMPSVECIVFNSGTILC-VPFTTYTPVC 159


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -2

Query: 294 QDSVCPSACVVFE 256
           + SVCPS  VVF+
Sbjct: 146 ETSVCPSQIVVFD 158


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 7/20 (35%), Positives = 15/20 (75%)
 Frame = -2

Query: 87  DLFVLILCILMLIAGVILMY 28
           D F+++  I+M + G+I+M+
Sbjct: 266 DFFMILNEIIMKLVGIIIMW 285


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 20.6 bits (41), Expect = 8.8
 Identities = 7/25 (28%), Positives = 15/25 (60%)
 Frame = -2

Query: 90  QDLFVLILCILMLIAGVILMYGHGM 16
           ++LF+ I+C +  + G+  +   GM
Sbjct: 415 KELFIAIVCFVSYLIGLFCITEGGM 439


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 20.6 bits (41), Expect = 8.8
 Identities = 7/25 (28%), Positives = 15/25 (60%)
 Frame = -2

Query: 90  QDLFVLILCILMLIAGVILMYGHGM 16
           ++LF+ I+C +  + G+  +   GM
Sbjct: 468 KELFIAIVCFVSYLIGLFCITEGGM 492


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 20.6 bits (41), Expect = 8.8
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 147 FTESLTNLIFGSLLNYF 197
           FTE L  LIF S ++++
Sbjct: 200 FTEHLGYLIFSSTISFY 216


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,390
Number of Sequences: 438
Number of extensions: 2115
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12682287
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)