Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP06_F_D01
         (504 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    29   0.027
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   1.0  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    23   2.4  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   2.4  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   7.3  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   9.6  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   9.6  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 29.1 bits (62), Expect = 0.027
 Identities = 9/26 (34%), Positives = 19/26 (73%)
 Frame = -1

Query: 417 IVCGQHVESPHLISFEIPIVNVGICT 340
           +VC  +V++ ++I+F  PI+ + +CT
Sbjct: 806 LVCNSYVDASYMIAFAYPIMLIVVCT 831


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 10/47 (21%), Positives = 26/47 (55%)
 Frame = +1

Query: 130 KNKKIKMSLEIPLMSTDEVIDLDPEQLPSGDEVLSILQQERSQLNVW 270
           + K+++ +L  PL+S ++++     +   GD + ++LQ+ +     W
Sbjct: 706 EEKEVEKALLKPLLSLEDLVRFSTLEGSGGDSLRTLLQRGQETGAEW 752


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +1

Query: 268 WINVALAYYKQKKIDDFLKIL 330
           WI   + YYK  KI D  K L
Sbjct: 66  WIFSCIGYYKLNKIHDAYKDL 86


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
 Frame = +1

Query: 133 NKKIKMSLEIPLMSTDEVIDLD---PEQLPSGDEVLSILQQERSQ 258
           N +  + L +P + + E+ DLD    E L SG  +    + E S+
Sbjct: 514 NTQYNLDLSLPQLDSTELADLDISLSENLSSGLSISDSTKPETSK 558


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -1

Query: 336 CFQDLEEVIDFLLFVICECN 277
           C ++ E  IDF + V  +CN
Sbjct: 515 CLKEKENEIDFKIEVTEDCN 534


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +2

Query: 233 VFYNKNAHNSMFGLMLHSHITNKRKSMTSSRSW 331
           VFY K+   + F LML S +   ++    + +W
Sbjct: 308 VFYEKSLALAAFSLMLTSILRYLQELHVDAPTW 340


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -3

Query: 73  FIAFFVYVQTY*KIF 29
           +I  FV +Q Y KIF
Sbjct: 212 YIPLFVMIQVYYKIF 226


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,309
Number of Sequences: 438
Number of extensions: 2949
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13864083
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)