Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_G13
         (655 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    22   4.5  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   4.5  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   6.0  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    21   7.9  

>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +1

Query: 325 LKTDVPPVALAK 360
           LK+D+PPVA  K
Sbjct: 249 LKSDIPPVAYVK 260


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = +1

Query: 415 YPTLKIFXKGELSSEYNGPXESNGIVKY 498
           Y   K++  GEL+S + GP   + ++ +
Sbjct: 406 YEEYKMYELGELASSFVGPKVKDCLISW 433


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = +1

Query: 292 LKPXYAVAAGLLKTDVPPVALAKVHC 369
           L P YAV +  +   VP + +  ++C
Sbjct: 188 LTPTYAVVSSSISFYVPCIVMLGIYC 213


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/28 (25%), Positives = 16/28 (57%)
 Frame = -2

Query: 525 GAGSNLGTHVLDNAIRLXWSIVLGRKLS 442
           G G  L +H++   + +  S+++G  L+
Sbjct: 128 GGGIELISHIISKQLHIPVSVLMGANLA 155


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,778
Number of Sequences: 438
Number of extensions: 3191
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)