Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_H21
         (384 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52836| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.0  
SB_11569| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.0  
SB_3867| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   4.0  

>SB_52836| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 224

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 14/54 (25%), Positives = 27/54 (50%)
 Frame = +3

Query: 99  LTARRKDAKSVKIKKNPAECQVQGFDAQGSCTPWSSLTKRRLRNLSRVYLQVSK 260
           +T RR+  K  ++ +N    +  G D + +CT W   TK+ +  L  V  + ++
Sbjct: 74  ITIRRESIK--RLLQNLKAFKAPGPDVEYACTVWDPCTKKNIYKLEMVQRRAAR 125


>SB_11569| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 488

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -1

Query: 222 AFSLSVMTRVYRNLEHRSLELDILQGS 142
           AF +S   RVY +L H  LEL+I  G+
Sbjct: 156 AFKMSTDARVYLSLVHAKLELEIRIGT 182


>SB_3867| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 242

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +2

Query: 203 ITDKEKAEKLKQSLPPGLQVKEV 271
           I + E+ EK+KQ   PGL VK++
Sbjct: 134 ILENERREKIKQFTEPGLTVKKI 156


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,045,659
Number of Sequences: 59808
Number of extensions: 132837
Number of successful extensions: 316
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 316
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 656970245
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)