Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_H21
         (384 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g59540.1 68416.m06645 60S ribosomal protein L38 (RPL38B) 60S ...    55   1e-08
At2g43460.1 68415.m05401 60S ribosomal protein L38 (RPL38A)            55   1e-08
At1g06920.1 68414.m00735 ovate family protein 58% similar to ova...    30   0.61 
At3g58590.1 68416.m06530 pentatricopeptide (PPR) repeat-containi...    26   7.5  
At2g07740.1 68415.m01002 zinc knuckle (CCHC-type) family protein...    26   9.9  
At1g14880.1 68414.m01779 expressed protein similar to PGPS/D12 [...    26   9.9  

>At3g59540.1 68416.m06645 60S ribosomal protein L38 (RPL38B) 60S
           RIBOSOMAL PROTEIN L38 - Lycopersicon esculentum,
           EMBL:X69979
          Length = 69

 Score = 55.2 bits (127), Expect = 1e-08
 Identities = 28/70 (40%), Positives = 42/70 (60%)
 Frame = +2

Query: 62  MPREIKDIKDFLINGEEERRQIGQNKEEPXXXXXXXXXXXXFLYTLVITDKEKAEKLKQS 241
           MP++I +IKDFL+    +  +  + K               +LYTL + D+EKA+KLKQS
Sbjct: 1   MPKQIHEIKDFLLTARRKDARSVKIKRSKDIVKFKVRCSR-YLYTLCVFDQEKADKLKQS 59

Query: 242 LPPGLQVKEV 271
           LPPGL V+++
Sbjct: 60  LPPGLSVQDL 69


>At2g43460.1 68415.m05401 60S ribosomal protein L38 (RPL38A) 
          Length = 69

 Score = 55.2 bits (127), Expect = 1e-08
 Identities = 28/70 (40%), Positives = 42/70 (60%)
 Frame = +2

Query: 62  MPREIKDIKDFLINGEEERRQIGQNKEEPXXXXXXXXXXXXFLYTLVITDKEKAEKLKQS 241
           MP++I +IKDFL+    +  +  + K               +LYTL + D+EKA+KLKQS
Sbjct: 1   MPKQIHEIKDFLLTARRKDARSVKIKRSKDIVKFKVRCSR-YLYTLCVFDQEKADKLKQS 59

Query: 242 LPPGLQVKEV 271
           LPPGL V+++
Sbjct: 60  LPPGLSVQDL 69


>At1g06920.1 68414.m00735 ovate family protein 58% similar to ovate
           protein (GI:23429649) [Lycopersicon esculentum];
           contains TIGRFAM TIGR01568 : uncharacterized
           plant-specific domain TIGR01568
          Length = 315

 Score = 29.9 bits (64), Expect = 0.61
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +3

Query: 42  ENYSSSTCRVKSKISKTF*LTARRKDAKSVKIKKNPAECQVQ 167
           E+     CR K K  KT   + RR  AKS +IK      ++Q
Sbjct: 185 EDEEEDACRTKKKHQKTLVSSGRRSSAKSPRIKLRARSPRIQ 226


>At3g58590.1 68416.m06530 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 741

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -2

Query: 257 GDL-EVNSA*VSQPSLCQ**PGCTGTLSIEALNLTFCRVLL 138
           GDL   N   VS  ++C+  P    T ++ AL++T C VLL
Sbjct: 6   GDLANHNDRVVSLLNVCRKAPSFARTKALHALSITLCSVLL 46


>At2g07740.1 68415.m01002 zinc knuckle (CCHC-type) family protein
           similar to zinc finger protein GB:AAA75253; some members
           of this protein family have a weak CCHC zinc fingers
           that is mostly from retroviral gag proteins
           (nucleocapsid)
          Length = 409

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 65  PREIKDIKDFLINGEEERRQIGQNKEE 145
           PR+  D+    I GEE R++ G+ +EE
Sbjct: 223 PRKGNDVSSRGIGGEEIRKECGKREEE 249


>At1g14880.1 68414.m01779 expressed protein similar to PGPS/D12
           [Petunia x hybrida] GI:4105794; contains Pfam profile
           PF04749: Protein of unknown function, DUF614
          Length = 151

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -1

Query: 237 CLSFSAFSLSVMTRVYRNLEHRSLELDI 154
           CL     +L  +T+ YR L+HR  ++ +
Sbjct: 96  CLKHFCCNLCALTQQYRELKHRGFDMSL 123


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,725,649
Number of Sequences: 28952
Number of extensions: 93249
Number of successful extensions: 230
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 226
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 537681456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)