Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_H15
         (665 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    23   2.2  
AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein p...    23   2.2  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    23   2.2  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   3.9  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      22   3.9  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      22   3.9  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    21   6.9  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    21   9.1  

>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
 Frame = -1

Query: 572 HTYHTAVQNRCPIPQNXQVHLGNQSSP---CYRHKVGYHRDXDQL*QVQ*SKGRNVVHTI 402
           H +H   +N+  +  +   HLG  S+P   C  ++   HR  ++  Q      ++V+H +
Sbjct: 126 HQHHFLHENKYQLEVDSGYHLGASSTPTNSCMEYQ-HLHRYKEEALQGDGRMRQHVMHNL 184

Query: 401 S 399
           S
Sbjct: 185 S 185


>AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein
           protein.
          Length = 210

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
 Frame = -1

Query: 572 HTYHTAVQNRCPIPQNXQVHLGNQSSP---CYRHKVGYHRDXDQL*QVQ*SKGRNVVHTI 402
           H +H   +N+  +  +   HLG  S+P   C  ++   HR  ++  Q      ++V+H +
Sbjct: 126 HQHHFLHENKYQLEVDSGYHLGASSTPTNSCMEYQ-HLHRYKEEALQGDGRMRQHVMHNL 184

Query: 401 S 399
           S
Sbjct: 185 S 185


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
 Frame = -1

Query: 572 HTYHTAVQNRCPIPQNXQVHLGNQSSP---CYRHKVGYHRDXDQL*QVQ*SKGRNVVHTI 402
           H +H   +N+  +  +   HLG  S+P   C  ++   HR  ++  Q      ++V+H +
Sbjct: 126 HQHHFLHENKYQLEVDSGYHLGASSTPTNSCMEYQ-HLHRYKEEALQGDGRMRQHVMHNL 184

Query: 401 S 399
           S
Sbjct: 185 S 185


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 10/43 (23%), Positives = 16/43 (37%)
 Frame = -1

Query: 590  WAPRELHTYHTAVQNRCPIPQNXQVHLGNQSSPCYRHKVGYHR 462
            W P E H        + P+P+  +   G     CY     ++R
Sbjct: 1369 WQPTEWHPPIPPTSEKPPLPEELKPQSGYFKIVCYFTNWAWYR 1411



 Score = 21.8 bits (44), Expect = 5.2
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = -3

Query: 180  TQSWPFMATTAPP 142
            T +WP   TT PP
Sbjct: 1076 TTNWPTQGTTIPP 1088


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 11/51 (21%), Positives = 19/51 (37%)
 Frame = -1

Query: 635 PEPVRLXQRVHLASSWAPRELHTYHTAVQNRCPIPQNXQVHLGNQSSPCYR 483
           P P+   +   +A+SW    ++        R P P    +   +  S  YR
Sbjct: 173 PYPILSPEMSQVAASWHTPSMYPLSPGAGFRSPYPSALPISTSSLPSDFYR 223


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 11/51 (21%), Positives = 19/51 (37%)
 Frame = -1

Query: 635 PEPVRLXQRVHLASSWAPRELHTYHTAVQNRCPIPQNXQVHLGNQSSPCYR 483
           P P+   +   +A+SW    ++        R P P    +   +  S  YR
Sbjct: 65  PYPILSPEMSQVAASWHTPSMYPLSPGAGFRSPYPSALPISTSSLPSDFYR 115


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +2

Query: 464 YDNQPYVCNMDLI 502
           Y+N PY  NMD +
Sbjct: 253 YNNYPYYSNMDYL 265


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 10/35 (28%), Positives = 16/35 (45%)
 Frame = -1

Query: 578 ELHTYHTAVQNRCPIPQNXQVHLGNQSSPCYRHKV 474
           +L T+H A      +P   ++    +SSP    KV
Sbjct: 57  QLFTHHKAPIRPVALPPKREIPSPKRSSPILAEKV 91


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,252
Number of Sequences: 336
Number of extensions: 3570
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17281430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)