Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_H11
         (654 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47652| Best HMM Match : Ribosomal_L10e (HMM E-Value=0.0041)         60   1e-09
SB_45389| Best HMM Match : Peptidase_M13 (HMM E-Value=4.1e-09)         31   0.62 
SB_57196| Best HMM Match : ADAM_spacer1 (HMM E-Value=3.1e-31)          29   2.5  
SB_28115| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_56325| Best HMM Match : Ribosomal_L14e (HMM E-Value=0.84)           29   3.3  
SB_12964| Best HMM Match : RVT_1 (HMM E-Value=5.6e-31)                 29   3.3  
SB_4321| Best HMM Match : Ank (HMM E-Value=0)                          28   5.8  
SB_43621| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_29658| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0012)               28   5.8  
SB_810| Best HMM Match : TAF4 (HMM E-Value=4.7e-31)                    28   5.8  
SB_58773| Best HMM Match : DUF834 (HMM E-Value=0.83)                   28   7.6  
SB_34832| Best HMM Match : SAP (HMM E-Value=1.4e-07)                   28   7.6  

>SB_47652| Best HMM Match : Ribosomal_L10e (HMM E-Value=0.0041)
          Length = 50

 Score = 60.5 bits (140), Expect = 1e-09
 Identities = 29/42 (69%), Positives = 33/42 (78%)
 Frame = +2

Query: 407 RATVXRVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQK 532
           + TV RV IGQ I+S+R+ D  KA  IEALRRAKFKFPGRQK
Sbjct: 9   QGTVARVNIGQTIISIRTKDGNKAAAIEALRRAKFKFPGRQK 50


>SB_45389| Best HMM Match : Peptidase_M13 (HMM E-Value=4.1e-09)
          Length = 177

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 21/68 (30%), Positives = 28/68 (41%)
 Frame = +1

Query: 232 LEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQG 411
           L    I C  Y  KN  +D   +RM +HP H IRIN ++S   ++          G P  
Sbjct: 115 LSYAHIFCGSYS-KNAAEDI--VRMSVHPLHPIRINGVVS--NSEEFAKAFSCPRGSPMN 169

Query: 412 YCXTCSHW 435
               C  W
Sbjct: 170 PEHKCEMW 177


>SB_57196| Best HMM Match : ADAM_spacer1 (HMM E-Value=3.1e-31)
          Length = 718

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +2

Query: 44  GAGQRDATGTAKINRIRNRGSVGVYLIPRSVSSIWVRRERPLTTF 178
           G G    T     N++  +G V   LIP+   +I VR  +P T+F
Sbjct: 313 GNGTACYTVEGSFNQLAGKGYVEAALIPKGARNIRVREVKPCTSF 357


>SB_28115| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 698

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -3

Query: 235 PKPLSSAVHIRRTPSARTVESRQRSLSSYPNRRYGSWDQ 119
           PK  SS V+  RT  AR    ++R++  Y  ++YG W Q
Sbjct: 295 PKFFSSIVYYGRT--ARFDYGKRRNMKRYGKKKYGKWRQ 331


>SB_56325| Best HMM Match : Ribosomal_L14e (HMM E-Value=0.84)
          Length = 650

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = -2

Query: 263 YLLQQIRPASKASELSCSYSSDTKCTHSGKSSTVALFLPKSKIR 132
           Y+++QI+ ASK   L     + T C  + K S V  F+ K K R
Sbjct: 252 YIVKQIQVASKVKVLKAKLENQTLCQQT-KRSKVTDFISKQKSR 294


>SB_12964| Best HMM Match : RVT_1 (HMM E-Value=5.6e-31)
          Length = 1273

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = -2

Query: 263  YLLQQIRPASKASELSCSYSSDTKCTHSGKSSTVALFLPKSKIR 132
            Y+++QI+ ASK   L     + T C  + K S V  F+ K K R
Sbjct: 1020 YIVKQIQVASKVKVLKAKLENQTLCQQT-KRSKVTDFISKQKSR 1062


>SB_4321| Best HMM Match : Ank (HMM E-Value=0)
          Length = 915

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 17/62 (27%), Positives = 26/62 (41%)
 Frame = +1

Query: 67  RYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAGR 246
           R CK K   ++R C+G    + R+     K    D+  +C    SDE      E  +  R
Sbjct: 444 RMCKGKGRDETRMCKGEGTDETRMC----KSEGTDETRMCKDEGSDETRMCKDEGTDETR 499

Query: 247 IC 252
           +C
Sbjct: 500 MC 501


>SB_43621| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1122

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +1

Query: 343 MLSCAGADRLQTGMRGAFGKPQGYCXTCS 429
           M   AG D +  G RG F  P G C +C+
Sbjct: 338 MTGDAGRDGVAEGRRGTFMSPVGACLSCT 366


>SB_29658| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0012)
          Length = 450

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 15/88 (17%)
 Frame = -3

Query: 322 GKGEVSCGYGTDPFRS-SLRGTYCSRYVLPPK----PLSSAVHIRRTPSARTVES----- 173
           G    + GY   P+ + S R  Y +   LPP+    P SS + ++  P   + E+     
Sbjct: 359 GNYSATPGYERVPYANGSERNGYYNGTYLPPQGVITPRSSPLTVQEDPMNGSRENGLSNG 418

Query: 172 -----RQRSLSSYPNRRYGSWDQVHPDR 104
                RQ    SY +RRYG ++  +PD+
Sbjct: 419 HSDSRRQPMRLSYDSRRYGGYEAYYPDQ 446


>SB_810| Best HMM Match : TAF4 (HMM E-Value=4.7e-31)
          Length = 883

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/54 (25%), Positives = 25/54 (46%)
 Frame = +3

Query: 420 HVFALDSPSCPCALVTGGRHRSSRLCAVPSSSSPDVKRSTYQXSGVSQSMNVMS 581
           HV A   P  P + +    + +S   A+ +SS+P +  S  Q +  + + N  S
Sbjct: 261 HVIANQHPPAPVSQLQSNSNNASAARAITTSSNPSISTSVLQGNLSTNARNTAS 314


>SB_58773| Best HMM Match : DUF834 (HMM E-Value=0.83)
          Length = 248

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 31/115 (26%), Positives = 40/115 (34%), Gaps = 8/115 (6%)
 Frame = -3

Query: 424 TXYSSPEACQTHHASQSGAYQLQRMITFY*CG*RGKGEV--SCGY-GTDPFRSSLRGTY- 257
           T YSS     +   + S  Y+     T Y  G RG      S GY GT    +   G+Y 
Sbjct: 109 TAYSSGYRETSTTTAYSSGYRGTPTTTAYSSGYRGTSTTTYSSGYRGTSTTTAYSSGSYS 168

Query: 256 -CSRYVLP---PKPLSSAVHIRRTPSARTVESRQRSLSSYPNRRYGSWDQVHPDR 104
            C    L    P           TP+A T  S        P+ R G+W     D+
Sbjct: 169 SCPSRTLSGCFPATSFGGTTTTTTPAATTTPSAYTRACGSPSSRIGAWRSAKRDK 223


>SB_34832| Best HMM Match : SAP (HMM E-Value=1.4e-07)
          Length = 1054

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/50 (26%), Positives = 25/50 (50%)
 Frame = +1

Query: 16  WCHFVKITMGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRAT 165
           W   ++I++  R    +R        K+RF + VP+P+I+    G+  +T
Sbjct: 137 WIDLLRISLNLRGNSVFRRSNKGEKEKARFKKSVPEPRIQPDSQGQVGST 186


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,637,777
Number of Sequences: 59808
Number of extensions: 514362
Number of successful extensions: 1517
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1367
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1516
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)