Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_H10
         (652 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39220| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_43872| Best HMM Match : DUF229 (HMM E-Value=0)                      30   1.4  
SB_8756| Best HMM Match : DUF1168 (HMM E-Value=1)                      30   1.4  
SB_37985| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_39733| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_59069| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  

>SB_39220| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 285

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +3

Query: 483 MTAAQLDAQEHXYFKNYIDKLQASEHWKDISYFEMNLE 596
           M+  Q++  E   F+ Y++++       ++SYFE NLE
Sbjct: 1   MSKEQVENNERKEFQKYLEEIYKHHKQSELSYFEHNLE 38


>SB_43872| Best HMM Match : DUF229 (HMM E-Value=0)
          Length = 806

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 5/60 (8%)
 Frame = +3

Query: 348 DELKIKKEDALRALSPVPXKEMEINSLDYFPV-----DLSFPRRPPWDFNMTAAQLDAQE 512
           + L  K E  +  +     K+ ++ SL   P+     D +    PPW FN+TA  L  QE
Sbjct: 119 NHLHTKLEHGVLQMRENATKDPQVTSLHARPIRRGKNDDTITYGPPWHFNLTAKSLQVQE 178


>SB_8756| Best HMM Match : DUF1168 (HMM E-Value=1)
          Length = 346

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +3

Query: 447 LSFPRRPPWDFNMTAAQLDAQEHXYF 524
           L  PRRP W+ +M+A +LD +E   F
Sbjct: 100 LRIPRRPEWNKSMSAEELDLKERDSF 125


>SB_37985| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 586

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = -2

Query: 648 SKGECHTFXEPSTTDAMSPDSFQNRKCPSNVPRLAIYLCSS 526
           +KG+ + F + S+  + + DS    +C  N  +L IY+C S
Sbjct: 483 TKGKTYYFIDTSSGTSNTIDSLNGGRCAQNKLKLKIYVCLS 523


>SB_39733| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2839

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = +3

Query: 249  NAYDVVSVNYQPSRGRGGRDTNRYALKFYRETEDELKIKKE 371
            N  DV + N + SR  G  D N ++ KF +  E+E+ +KKE
Sbjct: 1824 NNNDVDTNNCELSRNVGKLDNNLFS-KFQQSKEEEVPVKKE 1863


>SB_59069| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 664

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = +1

Query: 127 QLTRHAPSTSEDPXSAGRPKNNSCSLRSRTRFYLCLHRQEQMHT-MWSQSTTSRVVDAE 300
           Q+  HAP  +    + G P++     R++TR Y+  H   QMH  +  Q+ T R  +A+
Sbjct: 338 QMYVHAPRHAN---ARGAPRHAYARTRTQTRKYMYTHPDTQMHVHVDRQANTRRHANAQ 393


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,933,077
Number of Sequences: 59808
Number of extensions: 334340
Number of successful extensions: 760
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 760
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)