Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_H07
         (627 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g02205.2 68414.m00154 CER1 protein identical to maize gl1 hom...    29   1.9  
At1g02205.1 68414.m00153 CER1 protein identical to maize gl1 hom...    29   1.9  
At1g54590.1 68414.m06226 splicing factor Prp18 family protein co...    28   5.8  
At5g60610.1 68418.m07606 F-box family protein contains F-box dom...    27   7.7  
At5g11920.1 68418.m01394 glycosyl hydrolase family 32 protein si...    27   7.7  
At2g41790.1 68415.m05165 peptidase M16 family protein / insulina...    27   7.7  

>At1g02205.2 68414.m00154 CER1 protein identical to maize gl1
           homolog (glossy1 locus) GI:1209703 and CER1 GI:1199467
           from [Arabidopsis thaliana]
          Length = 625

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = -1

Query: 141 YSAVFPTCLYKSETLHNQIYTILRKYFSSEQREKV 37
           Y  VFP  L++   LHNQ++  L +Y++S  + ++
Sbjct: 47  YFLVFPFLLFR--ILHNQVWISLSRYYTSSGKRRI 79


>At1g02205.1 68414.m00153 CER1 protein identical to maize gl1
           homolog (glossy1 locus) GI:1209703 and CER1 GI:1199467
           from [Arabidopsis thaliana]
          Length = 580

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = -1

Query: 141 YSAVFPTCLYKSETLHNQIYTILRKYFSSEQREKV 37
           Y  VFP  L++   LHNQ++  L +Y++S  + ++
Sbjct: 47  YFLVFPFLLFR--ILHNQVWISLSRYYTSSGKRRI 79


>At1g54590.1 68414.m06226 splicing factor Prp18 family protein
           contains Pfam profile: PF02840 Prp18 domain
          Length = 256

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
 Frame = -2

Query: 569 LQRDYVQETL-FVRIVIVTLPIXHGHXDIFXCVDIHYV---ENTARTDAHAHIVHGEITR 402
           ++RDY+  T  F+++ I   P   G       V IH     E  + + + AHI++ E TR
Sbjct: 134 IKRDYLDATAQFIKLAIGNAPWPIG----VTMVGIHERSAREKISTSSSVAHIMNNETTR 189

Query: 401 RYSQS 387
           +Y QS
Sbjct: 190 KYLQS 194


>At5g60610.1 68418.m07606 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 388

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
 Frame = -2

Query: 356 SCKTILLQ-VCDSEIGALHLQ-DCVGVLESLTLQLIGE*KPPAALRLIIAERPLVGVKLP 183
           S KT+LLQ V  SE   L L   C  VLE L ++L    +   AL +I+     + +K+P
Sbjct: 147 SLKTLLLQCVAYSEEDPLRLLLSCCPVLEDLVIELDDANQNVKALVVIVPTLQCLSLKIP 206


>At5g11920.1 68418.m01394 glycosyl hydrolase family 32 protein
           similar to fructan 1-exohydrolase IIa GI:13940209 from
           [Cichorium intybus]; contains Pfam profile PF00251:
           Glycosyl hydrolases family 32
          Length = 550

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +2

Query: 302 DARHRSHCHILAEEWFYNSLAVQRENWSWIESTD 403
           D R+  H    A + F++S+  +R NW W+  TD
Sbjct: 276 DLRY-DHGTFYASKAFFDSVKNRRINWGWVIETD 308


>At2g41790.1 68415.m05165 peptidase M16 family protein / insulinase
           family protein contains Pfam domain, PF05193: Peptidase
           M16 inactive domain; similar to insulin-degrading enzyme
           (Insulysin, Insulinase, Insulin protease) [Mouse]
           SWISS-PROT:Q9JHR7
          Length = 970

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +2

Query: 347 FYNSLAVQRENWSWIESTDE*FHRERCAHVRRFAP 451
           +Y SL +Q + W W E  D   H E    V +F P
Sbjct: 644 YYCSLILQDQTWPWTEELDVLSHLE-AEDVAKFVP 677


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,391,796
Number of Sequences: 28952
Number of extensions: 232972
Number of successful extensions: 688
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 688
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1275599520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)