Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP02_F_H05
         (653 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32426| Best HMM Match : No HMM Matches (HMM E-Value=.)             187   8e-48
SB_52239| Best HMM Match : Adaptin_N (HMM E-Value=9.9e-36)             32   0.35 
SB_53234| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.82 
SB_54944| Best HMM Match : Gal_Lectin (HMM E-Value=9.5e-05)            29   2.5  
SB_40851| Best HMM Match : TSP_1 (HMM E-Value=3.4e-09)                 29   3.3  
SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_26086| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  

>SB_32426| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 779

 Score =  187 bits (455), Expect = 8e-48
 Identities = 101/184 (54%), Positives = 122/184 (66%)
 Frame = +1

Query: 100 RDVKDEDDNSSNPYQNLDKTIVLQETREFNQTLVIPRKCSLILTKILYLLNQGENFTTQE 279
           RD KDE++  SNP+QNLDK  VLQE R FN+T +  RKC  ILTKILYL+N         
Sbjct: 6   RDKKDEEEGLSNPFQNLDKGQVLQEARVFNETPINVRKCIHILTKILYLIN--------- 56

Query: 280 ATDAFFATTKLFQSKEIMLRRMVYLCIKELSKLAQDVIIVTSSLTKDMTGKEDLYRAAAI 459
                          ++MLRRMVYL IKEL+ +A+DVIIVTSSLTKDMTGKED++RA+AI
Sbjct: 57  ---------------QLMLRRMVYLAIKELANIAEDVIIVTSSLTKDMTGKEDMFRASAI 101

Query: 460 RALCSITDASMLQAIERYMKQAIVDKNPXXXXXXXXXXXXXXXXXPDLVRRWANEAXETI 639
           RALC ITD +MLQ IERY+KQA+VDKNP                  D+V+RW NEA E +
Sbjct: 102 RALCRITDNTMLQGIERYLKQAVVDKNPSVSSAALVSSLHLLKPNFDVVKRWVNEAQEAV 161

Query: 640 NSDN 651
           +SDN
Sbjct: 162 SSDN 165


>SB_52239| Best HMM Match : Adaptin_N (HMM E-Value=9.9e-36)
          Length = 723

 Score = 32.3 bits (70), Expect = 0.35
 Identities = 23/97 (23%), Positives = 44/97 (45%), Gaps = 4/97 (4%)
 Frame = +1

Query: 226 LTKILYLLNQGENFTTQEATDAFFATTKLFQSKEIMLRRMVYLCIKELS----KLAQDVI 393
           L K++ ++  GE F T   T   F      Q   I    +++  I   +    KL  ++I
Sbjct: 233 LKKVIQMILNGEKFPTLLMTVIKFLMP--LQDHTIKKLLLIFWEIVPKTGADGKLLHEMI 290

Query: 394 IVTSSLTKDMTGKEDLYRAAAIRALCSITDASMLQAI 504
           +V  +  KD+    +  R + +R LC + +A +L+ +
Sbjct: 291 LVCDAYRKDLQHPNEFIRGSTLRFLCKLKEAELLEPL 327


>SB_53234| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 55

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -3

Query: 441 QILFTGHVFSQR-GSHYDHILRQFTQFFDAKINHTSQ 334
           Q+L  GH F++  GSHY+ I+ Q   +F +    TSQ
Sbjct: 11  QVLNAGHFFARPVGSHYECIMGQINDYFQSGKGTTSQ 47


>SB_54944| Best HMM Match : Gal_Lectin (HMM E-Value=9.5e-05)
          Length = 392

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -3

Query: 396 YDHILRQFTQFFDAKINHTSQHDFFGLKQFCCRKE 292
           YD I+  ++ F+  K N T QHD    K +C ++E
Sbjct: 153 YDRIIL-YSTFYGRKDNKTCQHDVIPSKGYCAQQE 186


>SB_40851| Best HMM Match : TSP_1 (HMM E-Value=3.4e-09)
          Length = 925

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 28/121 (23%), Positives = 45/121 (37%)
 Frame = +1

Query: 127 SSNPYQNLDKTIVLQETREFNQTLVIPRKCSLILTKILYLLNQGENFTTQEATDAFFATT 306
           +S  Y+    T  L+   E      + R  S       +L N  E  TT     +F  ++
Sbjct: 388 TSTVYRTFSMTSRLENATELRTASTVYRTFSTTS----HLDNATELLTTSTLYRSFSVSS 443

Query: 307 KLFQSKEIMLRRMVYLCIKELSKLAQDVIIVTSSLTKDMTGKEDLYRAAAIRALCSITDA 486
            L  +KE++    VYL     S+L    + +T+S              A+I    SI + 
Sbjct: 444 HLDNAKELLDTSTVYLAPSPTSQLNNTTVFLTASTFNPTPSLTSQLNNASISLAVSIVEP 503

Query: 487 S 489
           S
Sbjct: 504 S 504


>SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1229

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 24/96 (25%), Positives = 44/96 (45%)
 Frame = +1

Query: 127  SSNPYQNLDKTIVLQETREFNQTLVIPRKCSLILTKILYLLNQGENFTTQEATDAFFATT 306
            SS    ++  T V+ ++   N T ++P   + I + I    +  ++  T + +   FATT
Sbjct: 821  SSAVASSISATSVVVDSTTPNTTTLVPSISASIPSSITMNSSIEQSIDTLKPSSIAFATT 880

Query: 307  KLFQSKEIMLRRMVYLCIKELSKLAQDVIIVTSSLT 414
             LFQ+  I +    Y   K +S +      + SSL+
Sbjct: 881  PLFQTSIIPVTTQSY--EKTVSVIKSTTFEILSSLS 914


>SB_26086| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1511

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -3

Query: 213  FSRDNERLIKLSCFLKYY-SFIEILVWVTAVIIFILNISLERAH 85
            F+ +NE  +K SCF  Y+   + I+V V  VII I+ I +   H
Sbjct: 1460 FAAENENSLK-SCFRCYHHDIVIIIVVVVLVIIIIMTIFVISCH 1502


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,841,143
Number of Sequences: 59808
Number of extensions: 329571
Number of successful extensions: 802
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 798
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)